miRNA display CGI


Results 41 - 60 of 536 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9189 3' -63.1 NC_002512.2 + 9634 0.66 0.763303
Target:  5'- aGGcCGUgGCCuGCGUCgCCCGG-GACc -3'
miRNA:   3'- -CCaGCGgCGGcUGCAG-GGGCCgCUGc -5'
9189 3' -63.1 NC_002512.2 + 77342 0.66 0.763303
Target:  5'- cGGaaagCGCUGCCGGugaacgucgGUCCCCGGuCGAa- -3'
miRNA:   3'- -CCa---GCGGCGGCUg--------CAGGGGCC-GCUgc -5'
9189 3' -63.1 NC_002512.2 + 106320 0.66 0.763303
Target:  5'- uGUCGgUGgCGACcaaGUCCCCGGCcgugaucugcguGGCGg -3'
miRNA:   3'- cCAGCgGCgGCUG---CAGGGGCCG------------CUGC- -5'
9189 3' -63.1 NC_002512.2 + 109222 0.66 0.763303
Target:  5'- cGGcC-CUGCUGACGgaCCCgGGCGACc -3'
miRNA:   3'- -CCaGcGGCGGCUGCa-GGGgCCGCUGc -5'
9189 3' -63.1 NC_002512.2 + 4731 0.66 0.763303
Target:  5'- --aCGCCGCCGACGaCUgCGaCGGCu -3'
miRNA:   3'- ccaGCGGCGGCUGCaGGgGCcGCUGc -5'
9189 3' -63.1 NC_002512.2 + 116337 0.66 0.763303
Target:  5'- aGGUCGUcuuCGCCGcCuUCCaCCGGgaGACGg -3'
miRNA:   3'- -CCAGCG---GCGGCuGcAGG-GGCCg-CUGC- -5'
9189 3' -63.1 NC_002512.2 + 83956 0.66 0.763303
Target:  5'- aGGUCGaagaagucCCGgCGGCGgaugCCCGGCG-CGg -3'
miRNA:   3'- -CCAGC--------GGCgGCUGCag--GGGCCGCuGC- -5'
9189 3' -63.1 NC_002512.2 + 35602 0.66 0.763303
Target:  5'- gGGUCGgaaCGCUGGcCGccaucuuccacUCCUCGGCGGCc -3'
miRNA:   3'- -CCAGCg--GCGGCU-GC-----------AGGGGCCGCUGc -5'
9189 3' -63.1 NC_002512.2 + 74634 0.66 0.763303
Target:  5'- --cCGCCGCgCGACGgCCCgGGgGAg- -3'
miRNA:   3'- ccaGCGGCG-GCUGCaGGGgCCgCUgc -5'
9189 3' -63.1 NC_002512.2 + 44695 0.66 0.763303
Target:  5'- cGUCGaCCGCCGccGCGUUCUCGGaGAa- -3'
miRNA:   3'- cCAGC-GGCGGC--UGCAGGGGCCgCUgc -5'
9189 3' -63.1 NC_002512.2 + 63935 0.66 0.763303
Target:  5'- uGGUgaaGCgGCCGGCGUCCuuCUGGUaGACc -3'
miRNA:   3'- -CCAg--CGgCGGCUGCAGG--GGCCG-CUGc -5'
9189 3' -63.1 NC_002512.2 + 97188 0.66 0.763303
Target:  5'- -cUCGCC-CaCGACG-CCCgucugCGGCGGCGg -3'
miRNA:   3'- ccAGCGGcG-GCUGCaGGG-----GCCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 59106 0.66 0.762441
Target:  5'- cGUCGUcgCGCCGAucgcgccCGUCgcgcuccauCCCGGCGAgGa -3'
miRNA:   3'- cCAGCG--GCGGCU-------GCAG---------GGGCCGCUgC- -5'
9189 3' -63.1 NC_002512.2 + 97450 0.66 0.762441
Target:  5'- cGGccCGCCGCCGcagacggGCGUCgUgGGCGAg- -3'
miRNA:   3'- -CCa-GCGGCGGC-------UGCAGgGgCCGCUgc -5'
9189 3' -63.1 NC_002512.2 + 24518 0.66 0.762441
Target:  5'- cGUCGCCGCCGuCcUUCCUgcccgcgGGgGACGc -3'
miRNA:   3'- cCAGCGGCGGCuGcAGGGG-------CCgCUGC- -5'
9189 3' -63.1 NC_002512.2 + 82394 0.66 0.760715
Target:  5'- cGGUgGCUccgcgcgcgggggaGCCgGugGUCCCgCGGCGGa- -3'
miRNA:   3'- -CCAgCGG--------------CGG-CugCAGGG-GCCGCUgc -5'
9189 3' -63.1 NC_002512.2 + 65142 0.66 0.759851
Target:  5'- -aUCGCgGCCGACGgagaggccgucccCCCCuGCGAUu -3'
miRNA:   3'- ccAGCGgCGGCUGCa------------GGGGcCGCUGc -5'
9189 3' -63.1 NC_002512.2 + 105031 0.66 0.755515
Target:  5'- cGGaCcCCGCCGACGcgCCguccgaccgggacgaCGGCGACGa -3'
miRNA:   3'- -CCaGcGGCGGCUGCa-GGg--------------GCCGCUGC- -5'
9189 3' -63.1 NC_002512.2 + 81628 0.66 0.754646
Target:  5'- gGGcCGUCGCC-ACGUCCaggcuCGGCG-CGu -3'
miRNA:   3'- -CCaGCGGCGGcUGCAGGg----GCCGCuGC- -5'
9189 3' -63.1 NC_002512.2 + 37258 0.66 0.754646
Target:  5'- cGUUGCCguagaaggugagGCCGcCGUCgCCCGccGCGGCGc -3'
miRNA:   3'- cCAGCGG------------CGGCuGCAG-GGGC--CGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.