miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9192 3' -55.7 NC_002512.2 + 119691 0.66 0.965912
Target:  5'- ---gGCGgagGACgCGCACCAGGUCcccgCGg -3'
miRNA:   3'- gacaCGCa--UUG-GCGUGGUCCGGua--GC- -5'
9192 3' -55.7 NC_002512.2 + 133667 0.66 0.965912
Target:  5'- ---cGCGcgGACCGCGC--GGCCGUCu -3'
miRNA:   3'- gacaCGCa-UUGGCGUGguCCGGUAGc -5'
9192 3' -55.7 NC_002512.2 + 195980 0.66 0.965912
Target:  5'- cCUGUGCGUcgaCGUcuGCCc-GCCGUCGg -3'
miRNA:   3'- -GACACGCAuugGCG--UGGucCGGUAGC- -5'
9192 3' -55.7 NC_002512.2 + 26782 0.66 0.965912
Target:  5'- ---gGCG-AGCUGCcgACCAGGCCG-CGg -3'
miRNA:   3'- gacaCGCaUUGGCG--UGGUCCGGUaGC- -5'
9192 3' -55.7 NC_002512.2 + 55733 0.66 0.965912
Target:  5'- ---cGCGUucccGCgGCGCCGGGgccuCCGUCGg -3'
miRNA:   3'- gacaCGCAu---UGgCGUGGUCC----GGUAGC- -5'
9192 3' -55.7 NC_002512.2 + 129382 0.66 0.965598
Target:  5'- -cGUGCGggugcucgacGACCGCGgccuccccaagguCCGGGCCA-CGa -3'
miRNA:   3'- gaCACGCa---------UUGGCGU-------------GGUCCGGUaGC- -5'
9192 3' -55.7 NC_002512.2 + 33490 0.66 0.962682
Target:  5'- ---cGCGUccCCGCGCCAGaCCcgCGg -3'
miRNA:   3'- gacaCGCAuuGGCGUGGUCcGGuaGC- -5'
9192 3' -55.7 NC_002512.2 + 65894 0.66 0.959243
Target:  5'- gUGUuCGgcGCCGUGgCggGGGCCGUCGg -3'
miRNA:   3'- gACAcGCauUGGCGUgG--UCCGGUAGC- -5'
9192 3' -55.7 NC_002512.2 + 21055 0.66 0.959243
Target:  5'- -cGUGCGggagcCCGaCGuCCGGGUCGUCa -3'
miRNA:   3'- gaCACGCauu--GGC-GU-GGUCCGGUAGc -5'
9192 3' -55.7 NC_002512.2 + 34345 0.66 0.955594
Target:  5'- gUGgGCGUGuugcuCCGCugCGGGgaCAUCGu -3'
miRNA:   3'- gACaCGCAUu----GGCGugGUCCg-GUAGC- -5'
9192 3' -55.7 NC_002512.2 + 170383 0.66 0.955594
Target:  5'- -gGUGUGUucuucguCCaGCAuCCAGGCCGcUCGa -3'
miRNA:   3'- gaCACGCAuu-----GG-CGU-GGUCCGGU-AGC- -5'
9192 3' -55.7 NC_002512.2 + 12308 0.66 0.951728
Target:  5'- ---gGCGgcGCCGCcggACCGGcucGCCGUCGc -3'
miRNA:   3'- gacaCGCauUGGCG---UGGUC---CGGUAGC- -5'
9192 3' -55.7 NC_002512.2 + 115200 0.66 0.951728
Target:  5'- -gGUGUG-GGCCGCG-CAGGCCAg-- -3'
miRNA:   3'- gaCACGCaUUGGCGUgGUCCGGUagc -5'
9192 3' -55.7 NC_002512.2 + 44792 0.66 0.947644
Target:  5'- ---cGgGUGGCCGcCGCCAucGCCGUCGa -3'
miRNA:   3'- gacaCgCAUUGGC-GUGGUc-CGGUAGC- -5'
9192 3' -55.7 NC_002512.2 + 138339 0.66 0.947644
Target:  5'- ---gGCGUggUCaGCGCCAGGUgGUCc -3'
miRNA:   3'- gacaCGCAuuGG-CGUGGUCCGgUAGc -5'
9192 3' -55.7 NC_002512.2 + 107747 0.67 0.943337
Target:  5'- ---cGCaGaGACCGCugCGGGCCgGUCGc -3'
miRNA:   3'- gacaCG-CaUUGGCGugGUCCGG-UAGC- -5'
9192 3' -55.7 NC_002512.2 + 51193 0.67 0.943337
Target:  5'- ---cGCGgcgGCCGCGCUgcGGGCC-UCGg -3'
miRNA:   3'- gacaCGCau-UGGCGUGG--UCCGGuAGC- -5'
9192 3' -55.7 NC_002512.2 + 70130 0.67 0.943337
Target:  5'- ---aGCGUGACCGacuCCGGGCacgaGUCu -3'
miRNA:   3'- gacaCGCAUUGGCgu-GGUCCGg---UAGc -5'
9192 3' -55.7 NC_002512.2 + 45483 0.67 0.942894
Target:  5'- ---cGCGggcGCCGCGCCGaaauccggucggcGGCCGUCc -3'
miRNA:   3'- gacaCGCau-UGGCGUGGU-------------CCGGUAGc -5'
9192 3' -55.7 NC_002512.2 + 91518 0.67 0.938806
Target:  5'- -gGUGaUGUucACCGCGCCGGG-CAUCu -3'
miRNA:   3'- gaCAC-GCAu-UGGCGUGGUCCgGUAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.