miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 3' -54.3 NC_002512.2 + 121333 0.74 0.751797
Target:  5'- aCGGU-GACCUCGcuCCGgcggCGGGGCCg -3'
miRNA:   3'- -GCUAgCUGGAGUucGGCaa--GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 212431 0.73 0.770208
Target:  5'- aGGUCGAgUUCGGGCCGgcCGGccgcGACCg -3'
miRNA:   3'- gCUAGCUgGAGUUCGGCaaGCC----CUGG- -5'
9193 3' -54.3 NC_002512.2 + 164195 0.73 0.788159
Target:  5'- uCGA-CGACUUCAugcagGGCC--UCGGGGCCg -3'
miRNA:   3'- -GCUaGCUGGAGU-----UCGGcaAGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 146840 0.73 0.796941
Target:  5'- aGGUCgccuggcccaggGugCUCGAGCuCGcgCGGGGCCa -3'
miRNA:   3'- gCUAG------------CugGAGUUCG-GCaaGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 18935 0.72 0.814079
Target:  5'- cCGGaCGACCUCGuuGGCC--UCGGGGCg -3'
miRNA:   3'- -GCUaGCUGGAGU--UCGGcaAGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 225827 0.72 0.814079
Target:  5'- ----gGACCUCGAGCCGcggGGGAUCg -3'
miRNA:   3'- gcuagCUGGAGUUCGGCaagCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 193143 0.72 0.814079
Target:  5'- aCGGUCGuCCUCGuccuGGCCGgcgUCuGGAUCg -3'
miRNA:   3'- -GCUAGCuGGAGU----UCGGCa--AGcCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 127912 0.72 0.82242
Target:  5'- gGAUCGGCCaCGAGCCcgccggCGGGcCCg -3'
miRNA:   3'- gCUAGCUGGaGUUCGGcaa---GCCCuGG- -5'
9193 3' -54.3 NC_002512.2 + 143534 0.72 0.82242
Target:  5'- uGG-CGGCCUCGucGCCG-UCGGcGGCCg -3'
miRNA:   3'- gCUaGCUGGAGUu-CGGCaAGCC-CUGG- -5'
9193 3' -54.3 NC_002512.2 + 179454 0.72 0.846443
Target:  5'- aCGGUCGACgCUCAGuucuuagaaCGUUCGGGgaGCCa -3'
miRNA:   3'- -GCUAGCUG-GAGUUcg-------GCAAGCCC--UGG- -5'
9193 3' -54.3 NC_002512.2 + 134299 0.71 0.86156
Target:  5'- gGAUCGuCUUCGAGgaCGUcgcCGGGGCCg -3'
miRNA:   3'- gCUAGCuGGAGUUCg-GCAa--GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 77128 0.71 0.86156
Target:  5'- uCGAUagaGACCUC--GCCGUcggGGGACCu -3'
miRNA:   3'- -GCUAg--CUGGAGuuCGGCAag-CCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 220602 0.71 0.868831
Target:  5'- cCGGUCGugCgCGAGCUGgugcugugcCGGGACUg -3'
miRNA:   3'- -GCUAGCugGaGUUCGGCaa-------GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 77519 0.71 0.875902
Target:  5'- gGggCGACC---GGUCGaUCGGGACCg -3'
miRNA:   3'- gCuaGCUGGaguUCGGCaAGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 67495 0.71 0.875902
Target:  5'- uCGGUCGGCgUCuuggGGCUGggagCGGGACa -3'
miRNA:   3'- -GCUAGCUGgAGu---UCGGCaa--GCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 189954 0.71 0.882769
Target:  5'- uCGGUCuucccgGACCUCuucGAGCUG--CGGGACCg -3'
miRNA:   3'- -GCUAG------CUGGAG---UUCGGCaaGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 41616 0.71 0.882769
Target:  5'- uGAacUCGACCUCGG--UGUUgGGGGCCa -3'
miRNA:   3'- gCU--AGCUGGAGUUcgGCAAgCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 221180 0.7 0.895876
Target:  5'- cCGAcCGACCUCgGAGUgGa-CGGGACCc -3'
miRNA:   3'- -GCUaGCUGGAG-UUCGgCaaGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 171732 0.7 0.895876
Target:  5'- aCGAUCggGACgUCGAGC---UCGGGGCCc -3'
miRNA:   3'- -GCUAG--CUGgAGUUCGgcaAGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 114525 0.7 0.895876
Target:  5'- cCGGUCGACCugcugacgcacaUCAAGCUGagCGuGGGCg -3'
miRNA:   3'- -GCUAGCUGG------------AGUUCGGCaaGC-CCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.