miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 3' -54.3 NC_002512.2 + 8659 1.12 0.00501
Target:  5'- cCGAUCGACCUCAAGCCGUUCGGGACCu -3'
miRNA:   3'- -GCUAGCUGGAGUUCGGCAAGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 94651 0.8 0.419118
Target:  5'- aCGA-CGGCCUCGAGgCGgccCGGGGCCg -3'
miRNA:   3'- -GCUaGCUGGAGUUCgGCaa-GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 190000 0.79 0.471873
Target:  5'- aGGUCGACCUCAaguuGGCCGcggUCGaGGCCg -3'
miRNA:   3'- gCUAGCUGGAGU----UCGGCa--AGCcCUGG- -5'
9193 3' -54.3 NC_002512.2 + 46759 0.79 0.471873
Target:  5'- uGAcCGGCUUCAGGuuGUguuUCGGGGCCg -3'
miRNA:   3'- gCUaGCUGGAGUUCggCA---AGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 212494 0.79 0.480992
Target:  5'- aCGAcucCGACCUCGGGCUGgaCGcGGACCa -3'
miRNA:   3'- -GCUa--GCUGGAGUUCGGCaaGC-CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 117029 0.78 0.508843
Target:  5'- gGAcgCGGCCaUCGAGCUGUUCGGGcugcuGCCg -3'
miRNA:   3'- gCUa-GCUGG-AGUUCGGCAAGCCC-----UGG- -5'
9193 3' -54.3 NC_002512.2 + 128185 0.78 0.527782
Target:  5'- aGGUCG-CCgagCGGGCCGccggCGGGACCg -3'
miRNA:   3'- gCUAGCuGGa--GUUCGGCaa--GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 194862 0.78 0.546978
Target:  5'- cCGAUCGGCCUC-AGCCGUUCccaccuGGCCc -3'
miRNA:   3'- -GCUAGCUGGAGuUCGGCAAGcc----CUGG- -5'
9193 3' -54.3 NC_002512.2 + 173504 0.77 0.560546
Target:  5'- --cUCGACCUCGccccGCCGUccgccgauccguccgUCGGGGCCg -3'
miRNA:   3'- gcuAGCUGGAGUu---CGGCA---------------AGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 76814 0.77 0.585973
Target:  5'- uCGAUCGccGCCUCGAccGCCGacccgacCGGGACCg -3'
miRNA:   3'- -GCUAGC--UGGAGUU--CGGCaa-----GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 111905 0.77 0.585973
Target:  5'- aCGAgCGGCCgcgCGGGuuGUUCGGGugCc -3'
miRNA:   3'- -GCUaGCUGGa--GUUCggCAAGCCCugG- -5'
9193 3' -54.3 NC_002512.2 + 124297 0.76 0.635366
Target:  5'- gCGGcUCGACCgcgCgGAGCUGaUCGGGGCCg -3'
miRNA:   3'- -GCU-AGCUGGa--G-UUCGGCaAGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 113156 0.76 0.635366
Target:  5'- ---cCGGCCUCGccgcGGCCGggCGGGACg -3'
miRNA:   3'- gcuaGCUGGAGU----UCGGCaaGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 138028 0.76 0.645265
Target:  5'- gGAUcCGACUUcCGAGCCGacauccugCGGGACCg -3'
miRNA:   3'- gCUA-GCUGGA-GUUCGGCaa------GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 155652 0.76 0.645265
Target:  5'- --uUCGGCgUCcGGCCGUucgccccgcgUCGGGACCg -3'
miRNA:   3'- gcuAGCUGgAGuUCGGCA----------AGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 30704 0.75 0.665027
Target:  5'- ---aCGACCUCAuggaGGCCG-UCGaGGACCu -3'
miRNA:   3'- gcuaGCUGGAGU----UCGGCaAGC-CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 66871 0.75 0.68469
Target:  5'- gCGAUggUGACCUCGGGCCGcUCGaGGaacGCCa -3'
miRNA:   3'- -GCUA--GCUGGAGUUCGGCaAGC-CC---UGG- -5'
9193 3' -54.3 NC_002512.2 + 211960 0.75 0.703219
Target:  5'- gGGUCGGCUgcuuccgUCAggacgcGGCCGUcguccUCGGGGCCg -3'
miRNA:   3'- gCUAGCUGG-------AGU------UCGGCA-----AGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 212977 0.75 0.70419
Target:  5'- uCGAgaucugCGACCUCAucgucgccgcGGCCGUcgggccCGGGGCCc -3'
miRNA:   3'- -GCUa-----GCUGGAGU----------UCGGCAa-----GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 85018 0.74 0.742439
Target:  5'- gGAUCGugCUCAGcuGCCGUUCGaacagguaguaGGACa -3'
miRNA:   3'- gCUAGCugGAGUU--CGGCAAGC-----------CCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.