miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 3' -54.3 NC_002512.2 + 8659 1.12 0.00501
Target:  5'- cCGAUCGACCUCAAGCCGUUCGGGACCu -3'
miRNA:   3'- -GCUAGCUGGAGUUCGGCAAGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 74581 0.7 0.913915
Target:  5'- aGAUCGuCCUCGgccauggucacGGCCGa-CGcGGACCg -3'
miRNA:   3'- gCUAGCuGGAGU-----------UCGGCaaGC-CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 102947 0.7 0.919486
Target:  5'- gGGUCGACCg-GGGCgCGggCGGGuaucGCCa -3'
miRNA:   3'- gCUAGCUGGagUUCG-GCaaGCCC----UGG- -5'
9193 3' -54.3 NC_002512.2 + 134858 0.66 0.989482
Target:  5'- cCGcgCGACguCUCGGgcgacGCCGUcgGGGACCu -3'
miRNA:   3'- -GCuaGCUG--GAGUU-----CGGCAagCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 30704 0.75 0.665027
Target:  5'- ---aCGACCUCAuggaGGCCG-UCGaGGACCu -3'
miRNA:   3'- gcuaGCUGGAGU----UCGGCaAGC-CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 66871 0.75 0.68469
Target:  5'- gCGAUggUGACCUCGGGCCGcUCGaGGaacGCCa -3'
miRNA:   3'- -GCUA--GCUGGAGUUCGGCaAGC-CC---UGG- -5'
9193 3' -54.3 NC_002512.2 + 18935 0.72 0.814079
Target:  5'- cCGGaCGACCUCGuuGGCC--UCGGGGCg -3'
miRNA:   3'- -GCUaGCUGGAGU--UCGGcaAGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 179454 0.72 0.846443
Target:  5'- aCGGUCGACgCUCAGuucuuagaaCGUUCGGGgaGCCa -3'
miRNA:   3'- -GCUAGCUG-GAGUUcg-------GCAAGCCC--UGG- -5'
9193 3' -54.3 NC_002512.2 + 41616 0.71 0.882769
Target:  5'- uGAacUCGACCUCGG--UGUUgGGGGCCa -3'
miRNA:   3'- gCU--AGCUGGAGUUcgGCAAgCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 36393 0.7 0.913915
Target:  5'- gGcgCGACCgaggucgucCAGGCCG-UCGuGGGCCu -3'
miRNA:   3'- gCuaGCUGGa--------GUUCGGCaAGC-CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 13554 0.7 0.895876
Target:  5'- aGAUCGAgCCgcCGA-CCGcgUCGGGGCCg -3'
miRNA:   3'- gCUAGCU-GGa-GUUcGGCa-AGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 67495 0.71 0.875902
Target:  5'- uCGGUCGGCgUCuuggGGCUGggagCGGGACa -3'
miRNA:   3'- -GCUAGCUGgAGu---UCGGCaa--GCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 128185 0.78 0.527782
Target:  5'- aGGUCG-CCgagCGGGCCGccggCGGGACCg -3'
miRNA:   3'- gCUAGCuGGa--GUUCGGCaa--GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 79123 0.7 0.908122
Target:  5'- cCGAgUCGGCCgUCAaucacgggucugGGCCGcgCGcGGGCCg -3'
miRNA:   3'- -GCU-AGCUGG-AGU------------UCGGCaaGC-CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 76814 0.77 0.585973
Target:  5'- uCGAUCGccGCCUCGAccGCCGacccgacCGGGACCg -3'
miRNA:   3'- -GCUAGC--UGGAGUU--CGGCaa-----GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 134299 0.71 0.86156
Target:  5'- gGAUCGuCUUCGAGgaCGUcgcCGGGGCCg -3'
miRNA:   3'- gCUAGCuGGAGUUCg-GCAa--GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 97202 0.7 0.908122
Target:  5'- cCGucugCGGCggCGGGCCGggCGGGACg -3'
miRNA:   3'- -GCua--GCUGgaGUUCGGCaaGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 98941 0.7 0.913915
Target:  5'- gCGGUCGuccGCCUCGAGCUcagUCGGuGuCCg -3'
miRNA:   3'- -GCUAGC---UGGAGUUCGGca-AGCC-CuGG- -5'
9193 3' -54.3 NC_002512.2 + 111905 0.77 0.585973
Target:  5'- aCGAgCGGCCgcgCGGGuuGUUCGGGugCc -3'
miRNA:   3'- -GCUaGCUGGa--GUUCggCAAGCCCugG- -5'
9193 3' -54.3 NC_002512.2 + 85018 0.74 0.742439
Target:  5'- gGAUCGugCUCAGcuGCCGUUCGaacagguaguaGGACa -3'
miRNA:   3'- gCUAGCugGAGUU--CGGCAAGC-----------CCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.