miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 3' -54.3 NC_002512.2 + 134858 0.66 0.989482
Target:  5'- cCGcgCGACguCUCGGgcgacGCCGUcgGGGACCu -3'
miRNA:   3'- -GCuaGCUG--GAGUU-----CGGCAagCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 222654 0.66 0.986647
Target:  5'- gCGA-CGGCCggcCGGGCCGa--GGGGCg -3'
miRNA:   3'- -GCUaGCUGGa--GUUCGGCaagCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 116752 0.66 0.986647
Target:  5'- gCGAUgGACCaggcCAGccGCUGUUCGuGGACg -3'
miRNA:   3'- -GCUAgCUGGa---GUU--CGGCAAGC-CCUGg -5'
9193 3' -54.3 NC_002512.2 + 124740 0.66 0.986491
Target:  5'- cCGAcUCGGCCUguucgugGAGCCGUcgUCGGcccagacGACCg -3'
miRNA:   3'- -GCU-AGCUGGAg------UUCGGCA--AGCC-------CUGG- -5'
9193 3' -54.3 NC_002512.2 + 141857 0.66 0.986015
Target:  5'- aGGUCGGCCaacacggUCcucuggaacgccgcGAGCCGUcucUCGGGuuCCa -3'
miRNA:   3'- gCUAGCUGG-------AG--------------UUCGGCA---AGCCCu-GG- -5'
9193 3' -54.3 NC_002512.2 + 109816 0.66 0.985025
Target:  5'- -cAUCGACCccgcguucacgUCGAaccGCCGggcgUCGgGGACCg -3'
miRNA:   3'- gcUAGCUGG-----------AGUU---CGGCa---AGC-CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 218496 0.66 0.985025
Target:  5'- gGGUCGuCCgcgucCGAGCCG-UC-GGACCc -3'
miRNA:   3'- gCUAGCuGGa----GUUCGGCaAGcCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 220342 0.66 0.983982
Target:  5'- cCGGaCGGCCUCGucaacgccguGGCCGUggCcgccgccgccgugcuGGGGCCg -3'
miRNA:   3'- -GCUaGCUGGAGU----------UCGGCAa-G---------------CCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 193435 0.66 0.983257
Target:  5'- aCGAgcgCGACCgCGGccGCCGguggCGGGAgCg -3'
miRNA:   3'- -GCUa--GCUGGaGUU--CGGCaa--GCCCUgG- -5'
9193 3' -54.3 NC_002512.2 + 213506 0.66 0.986647
Target:  5'- -cGUCGACUUCGAGggcgucguCCGggUCGGGguGCCc -3'
miRNA:   3'- gcUAGCUGGAGUUC--------GGCa-AGCCC--UGG- -5'
9193 3' -54.3 NC_002512.2 + 220734 0.66 0.987256
Target:  5'- --uUCGACCUcCAccucauggagcgcugGGCCGUcgaggccgacgUCGGGuCCa -3'
miRNA:   3'- gcuAGCUGGA-GU---------------UCGGCA-----------AGCCCuGG- -5'
9193 3' -54.3 NC_002512.2 + 40662 0.66 0.98813
Target:  5'- gCGAUCguucuuuguGACCgggCAAGCgGUUCGGaGCg -3'
miRNA:   3'- -GCUAG---------CUGGa--GUUCGgCAAGCCcUGg -5'
9193 3' -54.3 NC_002512.2 + 112154 0.66 0.989483
Target:  5'- gCGGUCGACggCGAGCCGgcgcUCGaGcCCg -3'
miRNA:   3'- -GCUAGCUGgaGUUCGGCa---AGCcCuGG- -5'
9193 3' -54.3 NC_002512.2 + 99709 0.66 0.989483
Target:  5'- --cUCGuCCUCGuccgcGCCG-UCGcGGGCCg -3'
miRNA:   3'- gcuAGCuGGAGUu----CGGCaAGC-CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 11273 0.66 0.989483
Target:  5'- uCGAUUGugUUCAugguGCCcacagCGGGACg -3'
miRNA:   3'- -GCUAGCugGAGUu---CGGcaa--GCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 95552 0.66 0.989483
Target:  5'- gGAgcUCGGCCgcggCGAGuCCG-UCGGcGCCg -3'
miRNA:   3'- gCU--AGCUGGa---GUUC-GGCaAGCCcUGG- -5'
9193 3' -54.3 NC_002512.2 + 216160 0.66 0.98813
Target:  5'- -cGUCGcgccCCUCAGGCucccgCGUcUCGGGAUCg -3'
miRNA:   3'- gcUAGCu---GGAGUUCG-----GCA-AGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 107067 0.66 0.98813
Target:  5'- cCGGUCGACgCgcuGGaCGUagGGGACCc -3'
miRNA:   3'- -GCUAGCUG-GaguUCgGCAagCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 221244 0.66 0.98813
Target:  5'- uCGAUCGGCCggccgCGgcggaAGUCGggggacgCGGGGCg -3'
miRNA:   3'- -GCUAGCUGGa----GU-----UCGGCaa-----GCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 178786 0.66 0.98813
Target:  5'- --uUCGACUUCAGcGCCGaccucUUGGcGGCCa -3'
miRNA:   3'- gcuAGCUGGAGUU-CGGCa----AGCC-CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.