miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 3' -54.3 NC_002512.2 + 2795 0.69 0.929959
Target:  5'- cCGAccCGGCCggcGGCCGg-CGGGACCc -3'
miRNA:   3'- -GCUa-GCUGGaguUCGGCaaGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 3512 0.68 0.952245
Target:  5'- -cGUCGGCCcuccaccCGAGCCcg-CGGGGCCc -3'
miRNA:   3'- gcUAGCUGGa------GUUCGGcaaGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 5269 0.67 0.974583
Target:  5'- gCGG-CGACCcCGAGCCcggUCGGcACCg -3'
miRNA:   3'- -GCUaGCUGGaGUUCGGca-AGCCcUGG- -5'
9193 3' -54.3 NC_002512.2 + 5957 0.7 0.895876
Target:  5'- gGAUCGACCUCc--CCGUcCGGcucGACCu -3'
miRNA:   3'- gCUAGCUGGAGuucGGCAaGCC---CUGG- -5'
9193 3' -54.3 NC_002512.2 + 8659 1.12 0.00501
Target:  5'- cCGAUCGACCUCAAGCCGUUCGGGACCu -3'
miRNA:   3'- -GCUAGCUGGAGUUCGGCAAGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 8923 0.69 0.934859
Target:  5'- aGggCGGCCUC-GGCCGggUCGGcGAUg -3'
miRNA:   3'- gCuaGCUGGAGuUCGGCa-AGCC-CUGg -5'
9193 3' -54.3 NC_002512.2 + 11111 0.66 0.98813
Target:  5'- --cUCGGCCUCGuccCCGgaCGGGgaACCg -3'
miRNA:   3'- gcuAGCUGGAGUuc-GGCaaGCCC--UGG- -5'
9193 3' -54.3 NC_002512.2 + 11273 0.66 0.989483
Target:  5'- uCGAUUGugUUCAugguGCCcacagCGGGACg -3'
miRNA:   3'- -GCUAGCugGAGUu---CGGcaa--GCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 11585 0.66 0.986647
Target:  5'- aCGAgCGGCCgcccaGGGCCG---GGGACCc -3'
miRNA:   3'- -GCUaGCUGGag---UUCGGCaagCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 13554 0.7 0.895876
Target:  5'- aGAUCGAgCCgcCGA-CCGcgUCGGGGCCg -3'
miRNA:   3'- gCUAGCU-GGa-GUUcGGCa-AGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 16180 0.68 0.956048
Target:  5'- ---cCGACgUCGaagaAGCCaGUUCGaGGACCg -3'
miRNA:   3'- gcuaGCUGgAGU----UCGG-CAAGC-CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 18935 0.72 0.814079
Target:  5'- cCGGaCGACCUCGuuGGCC--UCGGGGCg -3'
miRNA:   3'- -GCUaGCUGGAGU--UCGGcaAGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 19375 0.68 0.966205
Target:  5'- uCGG-CGGCCUCGcGCuCGcgUCGGGcCCu -3'
miRNA:   3'- -GCUaGCUGGAGUuCG-GCa-AGCCCuGG- -5'
9193 3' -54.3 NC_002512.2 + 21450 0.66 0.983257
Target:  5'- cCGAcUCGAUCggGGGCCGgcgcCGGGAgCg -3'
miRNA:   3'- -GCU-AGCUGGagUUCGGCaa--GCCCUgG- -5'
9193 3' -54.3 NC_002512.2 + 27846 0.69 0.939537
Target:  5'- gCGAcaCGACCgCGAGCCGgaccggcggGGGACCc -3'
miRNA:   3'- -GCUa-GCUGGaGUUCGGCaag------CCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 30704 0.75 0.665027
Target:  5'- ---aCGACCUCAuggaGGCCG-UCGaGGACCu -3'
miRNA:   3'- gcuaGCUGGAGU----UCGGCaAGC-CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 32101 0.66 0.985025
Target:  5'- cCGggUGuCCUCGcGGUCGaggUCGGGAUCg -3'
miRNA:   3'- -GCuaGCuGGAGU-UCGGCa--AGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 35027 0.67 0.979255
Target:  5'- gGAaCGGCUg-AGGCCGaUCGGGGuCCg -3'
miRNA:   3'- gCUaGCUGGagUUCGGCaAGCCCU-GG- -5'
9193 3' -54.3 NC_002512.2 + 35315 0.66 0.986647
Target:  5'- gCGGUUGACCUUgagGGGCaCGgccuuccCGGGGCg -3'
miRNA:   3'- -GCUAGCUGGAG---UUCG-GCaa-----GCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 36393 0.7 0.913915
Target:  5'- gGcgCGACCgaggucgucCAGGCCG-UCGuGGGCCu -3'
miRNA:   3'- gCuaGCUGGa--------GUUCGGCaAGC-CCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.