miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 3' -54.3 NC_002512.2 + 39386 0.66 0.983257
Target:  5'- aCGAUCGAa---GAGCCG-UCGGaACCu -3'
miRNA:   3'- -GCUAGCUggagUUCGGCaAGCCcUGG- -5'
9193 3' -54.3 NC_002512.2 + 40662 0.66 0.98813
Target:  5'- gCGAUCguucuuuguGACCgggCAAGCgGUUCGGaGCg -3'
miRNA:   3'- -GCUAG---------CUGGa--GUUCGgCAAGCCcUGg -5'
9193 3' -54.3 NC_002512.2 + 41616 0.71 0.882769
Target:  5'- uGAacUCGACCUCGG--UGUUgGGGGCCa -3'
miRNA:   3'- gCU--AGCUGGAGUUcgGCAAgCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 41791 0.66 0.98813
Target:  5'- gCGggCGACCgaguuGCCGUucUCGcGGACg -3'
miRNA:   3'- -GCuaGCUGGaguu-CGGCA--AGC-CCUGg -5'
9193 3' -54.3 NC_002512.2 + 44329 0.66 0.98813
Target:  5'- aGGUCc-CCUCGacGGCCacgccgCGGGGCCg -3'
miRNA:   3'- gCUAGcuGGAGU--UCGGcaa---GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 44458 0.67 0.976772
Target:  5'- gGA-CGGCCUCGAagaccuccagggcGCCc--CGGGGCCg -3'
miRNA:   3'- gCUaGCUGGAGUU-------------CGGcaaGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 46759 0.79 0.471873
Target:  5'- uGAcCGGCUUCAGGuuGUguuUCGGGGCCg -3'
miRNA:   3'- gCUaGCUGGAGUUCggCA---AGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 49631 0.69 0.934859
Target:  5'- gGAUCGuCCgggCGAGCCGggaccagUC-GGACCc -3'
miRNA:   3'- gCUAGCuGGa--GUUCGGCa------AGcCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 54356 0.67 0.974583
Target:  5'- uCGAUCGcggccacCCUcCAGGCC-UUCuGGACCg -3'
miRNA:   3'- -GCUAGCu------GGA-GUUCGGcAAGcCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 55018 0.69 0.934859
Target:  5'- uCGAcgUCGAUCgaGAGCCGgUCGGG-CCg -3'
miRNA:   3'- -GCU--AGCUGGagUUCGGCaAGCCCuGG- -5'
9193 3' -54.3 NC_002512.2 + 55662 0.67 0.977006
Target:  5'- gGA-CGA-CUCGAcGCCGggCGGGGCg -3'
miRNA:   3'- gCUaGCUgGAGUU-CGGCaaGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 62733 0.68 0.966205
Target:  5'- uCGA-CGGCCUCGcggggcacGCCGaccUCGGaGACCa -3'
miRNA:   3'- -GCUaGCUGGAGUu-------CGGCa--AGCC-CUGG- -5'
9193 3' -54.3 NC_002512.2 + 63356 0.68 0.952245
Target:  5'- gGAUCGucuucguCCUCAccgucgggGGCCGaUCcGGACCg -3'
miRNA:   3'- gCUAGCu------GGAGU--------UCGGCaAGcCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 66871 0.75 0.68469
Target:  5'- gCGAUggUGACCUCGGGCCGcUCGaGGaacGCCa -3'
miRNA:   3'- -GCUA--GCUGGAGUUCGGCaAGC-CC---UGG- -5'
9193 3' -54.3 NC_002512.2 + 67495 0.71 0.875902
Target:  5'- uCGGUCGGCgUCuuggGGCUGggagCGGGACa -3'
miRNA:   3'- -GCUAGCUGgAGu---UCGGCaa--GCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 70623 0.69 0.929457
Target:  5'- aCGGUCGAUCaUCGAacaguguGCCG-UCaGGACCa -3'
miRNA:   3'- -GCUAGCUGG-AGUU-------CGGCaAGcCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 71583 0.66 0.983257
Target:  5'- cCGGaCGACCgc-GGCC-UUgGGGGCCg -3'
miRNA:   3'- -GCUaGCUGGaguUCGGcAAgCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 71738 0.67 0.971979
Target:  5'- gGAUgGugCUCAGGuaGUcgCGGaGGCCg -3'
miRNA:   3'- gCUAgCugGAGUUCggCAa-GCC-CUGG- -5'
9193 3' -54.3 NC_002512.2 + 74581 0.7 0.913915
Target:  5'- aGAUCGuCCUCGgccauggucacGGCCGa-CGcGGACCg -3'
miRNA:   3'- gCUAGCuGGAGU-----------UCGGCaaGC-CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 75071 0.67 0.981336
Target:  5'- cCGGgcggCGACgUCGAggcGCCGUUuCGGGGgCu -3'
miRNA:   3'- -GCUa---GCUGgAGUU---CGGCAA-GCCCUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.