Results 21 - 40 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9193 | 3' | -54.3 | NC_002512.2 | + | 2795 | 0.69 | 0.929959 |
Target: 5'- cCGAccCGGCCggcGGCCGg-CGGGACCc -3' miRNA: 3'- -GCUa-GCUGGaguUCGGCaaGCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 102947 | 0.7 | 0.919486 |
Target: 5'- gGGUCGACCg-GGGCgCGggCGGGuaucGCCa -3' miRNA: 3'- gCUAGCUGGagUUCG-GCaaGCCC----UGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 67495 | 0.71 | 0.875902 |
Target: 5'- uCGGUCGGCgUCuuggGGCUGggagCGGGACa -3' miRNA: 3'- -GCUAGCUGgAGu---UCGGCaa--GCCCUGg -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 111905 | 0.77 | 0.585973 |
Target: 5'- aCGAgCGGCCgcgCGGGuuGUUCGGGugCc -3' miRNA: 3'- -GCUaGCUGGa--GUUCggCAAGCCCugG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 123331 | 0.68 | 0.955305 |
Target: 5'- -cGUCGACUUCGGGCCGcuggagcccccgUCcaagguccGGGGCCg -3' miRNA: 3'- gcUAGCUGGAGUUCGGCa-----------AG--------CCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 27846 | 0.69 | 0.939537 |
Target: 5'- gCGAcaCGACCgCGAGCCGgaccggcggGGGACCc -3' miRNA: 3'- -GCUa-GCUGGaGUUCGGCaag------CCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 74581 | 0.7 | 0.913915 |
Target: 5'- aGAUCGuCCUCGgccauggucacGGCCGa-CGcGGACCg -3' miRNA: 3'- gCUAGCuGGAGU-----------UCGGCaaGC-CCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 76814 | 0.77 | 0.585973 |
Target: 5'- uCGAUCGccGCCUCGAccGCCGacccgacCGGGACCg -3' miRNA: 3'- -GCUAGC--UGGAGUU--CGGCaa-----GCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 100176 | 0.69 | 0.934859 |
Target: 5'- gGAUCGAcaaccccgguuaCCUCGAGUCGgacggcgaUUCGGGcuacGCCg -3' miRNA: 3'- gCUAGCU------------GGAGUUCGGC--------AAGCCC----UGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 128185 | 0.78 | 0.527782 |
Target: 5'- aGGUCG-CCgagCGGGCCGccggCGGGACCg -3' miRNA: 3'- gCUAGCuGGa--GUUCGGCaa--GCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 98941 | 0.7 | 0.913915 |
Target: 5'- gCGGUCGuccGCCUCGAGCUcagUCGGuGuCCg -3' miRNA: 3'- -GCUAGC---UGGAGUUCGGca-AGCC-CuGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 8923 | 0.69 | 0.934859 |
Target: 5'- aGggCGGCCUC-GGCCGggUCGGcGAUg -3' miRNA: 3'- gCuaGCUGGAGuUCGGCa-AGCC-CUGg -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 79123 | 0.7 | 0.908122 |
Target: 5'- cCGAgUCGGCCgUCAaucacgggucugGGCCGcgCGcGGGCCg -3' miRNA: 3'- -GCU-AGCUGG-AGU------------UCGGCaaGC-CCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 41616 | 0.71 | 0.882769 |
Target: 5'- uGAacUCGACCUCGG--UGUUgGGGGCCa -3' miRNA: 3'- gCU--AGCUGGAGUUcgGCAAgCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 18935 | 0.72 | 0.814079 |
Target: 5'- cCGGaCGACCUCGuuGGCC--UCGGGGCg -3' miRNA: 3'- -GCUaGCUGGAGU--UCGGcaAGCCCUGg -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 30704 | 0.75 | 0.665027 |
Target: 5'- ---aCGACCUCAuggaGGCCG-UCGaGGACCu -3' miRNA: 3'- gcuaGCUGGAGU----UCGGCaAGC-CCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 86969 | 0.68 | 0.95964 |
Target: 5'- uCGGUCGACgaagcGGCCGUgaugUGGGACg -3' miRNA: 3'- -GCUAGCUGgagu-UCGGCAa---GCCCUGg -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 119307 | 0.68 | 0.956048 |
Target: 5'- aGAUCGACgUCAAGCUc-UCGGucaucucgauGGCCg -3' miRNA: 3'- gCUAGCUGgAGUUCGGcaAGCC----------CUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 116159 | 0.69 | 0.943992 |
Target: 5'- --cUCGGCCcgCAGaucGCCGcccgcgUCGGGACCc -3' miRNA: 3'- gcuAGCUGGa-GUU---CGGCa-----AGCCCUGG- -5' |
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9193 | 3' | -54.3 | NC_002512.2 | + | 137787 | 0.69 | 0.939537 |
Target: 5'- aGGUCGGCgCUCGgcgGGCCGcgcgucCGGcGGCCg -3' miRNA: 3'- gCUAGCUG-GAGU---UCGGCaa----GCC-CUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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