miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 5' -61.5 NC_002512.2 + 220014 0.66 0.827248
Target:  5'- gCGGGUCgaGaggCCGCUCCGucucgGGGUcCGGg -3'
miRNA:   3'- -GCCCAGggCa--GGUGAGGC-----UCCA-GCCa -5'
9193 5' -61.5 NC_002512.2 + 179014 0.66 0.827248
Target:  5'- uGGuUCCCGugUCCuuCUCCGAcGUCGGg -3'
miRNA:   3'- gCCcAGGGC--AGGu-GAGGCUcCAGCCa -5'
9193 5' -61.5 NC_002512.2 + 227979 0.66 0.827248
Target:  5'- aGGGcCCCGgcgCCGagggCCGAGGgcCGGa -3'
miRNA:   3'- gCCCaGGGCa--GGUga--GGCUCCa-GCCa -5'
9193 5' -61.5 NC_002512.2 + 94021 0.66 0.819366
Target:  5'- aGGGcCUCGUCCgccaGCUCCucGG-CGGUg -3'
miRNA:   3'- gCCCaGGGCAGG----UGAGGcuCCaGCCA- -5'
9193 5' -61.5 NC_002512.2 + 155272 0.66 0.819366
Target:  5'- gGcGGUCUCGcgcUCCGCUCCGGuccGcGUCGGc -3'
miRNA:   3'- gC-CCAGGGC---AGGUGAGGCU---C-CAGCCa -5'
9193 5' -61.5 NC_002512.2 + 32083 0.66 0.814567
Target:  5'- gGGGUCgCCGauggcggcccgggugUCCucGCggUCGAGGUCGGg -3'
miRNA:   3'- gCCCAG-GGC---------------AGG--UGa-GGCUCCAGCCa -5'
9193 5' -61.5 NC_002512.2 + 156710 0.66 0.803172
Target:  5'- gCGGGaCCUGUCCGCagcuggucucgUCCGucGUCuGGUa -3'
miRNA:   3'- -GCCCaGGGCAGGUG-----------AGGCucCAG-CCA- -5'
9193 5' -61.5 NC_002512.2 + 102040 0.66 0.794872
Target:  5'- aCGGGaUCCCGcUCCggACUCCGGaG-CGGUu -3'
miRNA:   3'- -GCCC-AGGGC-AGG--UGAGGCUcCaGCCA- -5'
9193 5' -61.5 NC_002512.2 + 212847 0.66 0.794872
Target:  5'- gCGGGcgccgUCCGUCCcCUCCGAGcGUCc-- -3'
miRNA:   3'- -GCCCa----GGGCAGGuGAGGCUC-CAGcca -5'
9193 5' -61.5 NC_002512.2 + 1885 0.66 0.786447
Target:  5'- cCGcGUCCCGUCCgGCUCCGGcccUCGGc -3'
miRNA:   3'- -GCcCAGGGCAGG-UGAGGCUcc-AGCCa -5'
9193 5' -61.5 NC_002512.2 + 28535 0.66 0.786447
Target:  5'- uCGGGUCcgCCG-CCGC-CCGAuGUCGGc -3'
miRNA:   3'- -GCCCAG--GGCaGGUGaGGCUcCAGCCa -5'
9193 5' -61.5 NC_002512.2 + 84679 0.66 0.777903
Target:  5'- -uGGUCCuCGUCCcgcaGC-CCGGGGUCGa- -3'
miRNA:   3'- gcCCAGG-GCAGG----UGaGGCUCCAGCca -5'
9193 5' -61.5 NC_002512.2 + 157100 0.66 0.777903
Target:  5'- gCGGG-CCCGUCCcggcgacguccCUCCcggcgucgGGGGUCGGc -3'
miRNA:   3'- -GCCCaGGGCAGGu----------GAGG--------CUCCAGCCa -5'
9193 5' -61.5 NC_002512.2 + 149141 0.66 0.777903
Target:  5'- cCGGGaCCCGggaCCGC-CgCGGGGcCGGUg -3'
miRNA:   3'- -GCCCaGGGCa--GGUGaG-GCUCCaGCCA- -5'
9193 5' -61.5 NC_002512.2 + 203763 0.66 0.775318
Target:  5'- uGGGUUuuGUCCGCuugcccaagaggucUCUGAGGaaucuUCGGa -3'
miRNA:   3'- gCCCAGggCAGGUG--------------AGGCUCC-----AGCCa -5'
9193 5' -61.5 NC_002512.2 + 150500 0.67 0.769248
Target:  5'- ---uUCUCGUCCGC-CCGcGGGUCGGg -3'
miRNA:   3'- gcccAGGGCAGGUGaGGC-UCCAGCCa -5'
9193 5' -61.5 NC_002512.2 + 5482 0.67 0.758723
Target:  5'- uCGGGgaccucguggcgCgCGUCCGCgCCGGGGUCGcGa -3'
miRNA:   3'- -GCCCa-----------GgGCAGGUGaGGCUCCAGC-Ca -5'
9193 5' -61.5 NC_002512.2 + 6562 0.67 0.75163
Target:  5'- aGGGUCCCGUCCuC-CCGAccGUucaCGGUg -3'
miRNA:   3'- gCCCAGGGCAGGuGaGGCUc-CA---GCCA- -5'
9193 5' -61.5 NC_002512.2 + 5771 0.67 0.733652
Target:  5'- --uGUCCCGUCCGCUCaGAcGGUuCGGc -3'
miRNA:   3'- gccCAGGGCAGGUGAGgCU-CCA-GCCa -5'
9193 5' -61.5 NC_002512.2 + 111926 0.67 0.724547
Target:  5'- uCGGGUgCCGgaacaGCUCC-AGGUCGGc -3'
miRNA:   3'- -GCCCAgGGCagg--UGAGGcUCCAGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.