miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 5' -61.5 NC_002512.2 + 1600 0.71 0.498343
Target:  5'- cCGGGUCCCGUCCucccucucccacccGgUCCGcGGUCaGUc -3'
miRNA:   3'- -GCCCAGGGCAGG--------------UgAGGCuCCAGcCA- -5'
9193 5' -61.5 NC_002512.2 + 1885 0.66 0.786447
Target:  5'- cCGcGUCCCGUCCgGCUCCGGcccUCGGc -3'
miRNA:   3'- -GCcCAGGGCAGG-UGAGGCUcc-AGCCa -5'
9193 5' -61.5 NC_002512.2 + 5482 0.67 0.758723
Target:  5'- uCGGGgaccucguggcgCgCGUCCGCgCCGGGGUCGcGa -3'
miRNA:   3'- -GCCCa-----------GgGCAGGUGaGGCUCCAGC-Ca -5'
9193 5' -61.5 NC_002512.2 + 5771 0.67 0.733652
Target:  5'- --uGUCCCGUCCGCUCaGAcGGUuCGGc -3'
miRNA:   3'- gccCAGGGCAGGUGAGgCU-CCA-GCCa -5'
9193 5' -61.5 NC_002512.2 + 6562 0.67 0.75163
Target:  5'- aGGGUCCCGUCCuC-CCGAccGUucaCGGUg -3'
miRNA:   3'- gCCCAGGGCAGGuGaGGCUc-CA---GCCA- -5'
9193 5' -61.5 NC_002512.2 + 8701 1.06 0.002888
Target:  5'- uCGGGUCCCGUCCACUCCGAGGUCGGUc -3'
miRNA:   3'- -GCCCAGGGCAGGUGAGGCUCCAGCCA- -5'
9193 5' -61.5 NC_002512.2 + 17383 0.78 0.205352
Target:  5'- uCGuGGUCCgCGUCCAgcCCGAGGUCGGa -3'
miRNA:   3'- -GC-CCAGG-GCAGGUgaGGCUCCAGCCa -5'
9193 5' -61.5 NC_002512.2 + 19672 0.68 0.696851
Target:  5'- uCGGGUCCgCGUCUccguCUCgGAcgaucagacGGUCGGg -3'
miRNA:   3'- -GCCCAGG-GCAGGu---GAGgCU---------CCAGCCa -5'
9193 5' -61.5 NC_002512.2 + 28535 0.66 0.786447
Target:  5'- uCGGGUCcgCCG-CCGC-CCGAuGUCGGc -3'
miRNA:   3'- -GCCCAG--GGCaGGUGaGGCUcCAGCCa -5'
9193 5' -61.5 NC_002512.2 + 32010 0.7 0.555708
Target:  5'- cCGGGUCCCGUCacuuGCcCCGcaGUCGGUu -3'
miRNA:   3'- -GCCCAGGGCAGg---UGaGGCucCAGCCA- -5'
9193 5' -61.5 NC_002512.2 + 32083 0.66 0.814567
Target:  5'- gGGGUCgCCGauggcggcccgggugUCCucGCggUCGAGGUCGGg -3'
miRNA:   3'- gCCCAG-GGC---------------AGG--UGa-GGCUCCAGCCa -5'
9193 5' -61.5 NC_002512.2 + 37309 0.69 0.621458
Target:  5'- gCGGGa-CgGUCCGCUCCGAGGcccCGGc -3'
miRNA:   3'- -GCCCagGgCAGGUGAGGCUCCa--GCCa -5'
9193 5' -61.5 NC_002512.2 + 83127 0.67 0.724547
Target:  5'- uCGGGUCgUCGUCCcCgucgUCGAGGUCGu- -3'
miRNA:   3'- -GCCCAG-GGCAGGuGa---GGCUCCAGCca -5'
9193 5' -61.5 NC_002512.2 + 84679 0.66 0.777903
Target:  5'- -uGGUCCuCGUCCcgcaGC-CCGGGGUCGa- -3'
miRNA:   3'- gcCCAGG-GCAGG----UGaGGCUCCAGCca -5'
9193 5' -61.5 NC_002512.2 + 93457 0.68 0.686581
Target:  5'- cCGGGUCCCcucguGUCCGgUCaugggauaccagaUGGGGUUGGUu -3'
miRNA:   3'- -GCCCAGGG-----CAGGUgAG-------------GCUCCAGCCA- -5'
9193 5' -61.5 NC_002512.2 + 93854 0.68 0.706139
Target:  5'- aCGGGUCgCGgucUCCcUUCCGAGGUucucaCGGUu -3'
miRNA:   3'- -GCCCAGgGC---AGGuGAGGCUCCA-----GCCA- -5'
9193 5' -61.5 NC_002512.2 + 94021 0.66 0.819366
Target:  5'- aGGGcCUCGUCCgccaGCUCCucGG-CGGUg -3'
miRNA:   3'- gCCCaGGGCAGG----UGAGGcuCCaGCCA- -5'
9193 5' -61.5 NC_002512.2 + 102040 0.66 0.794872
Target:  5'- aCGGGaUCCCGcUCCggACUCCGGaG-CGGUu -3'
miRNA:   3'- -GCCC-AGGGC-AGG--UGAGGCUcCaGCCA- -5'
9193 5' -61.5 NC_002512.2 + 111926 0.67 0.724547
Target:  5'- uCGGGUgCCGgaacaGCUCC-AGGUCGGc -3'
miRNA:   3'- -GCCCAgGGCagg--UGAGGcUCCAGCCa -5'
9193 5' -61.5 NC_002512.2 + 113186 0.71 0.5281
Target:  5'- cCGGcGUCgCCGUCCGCUCCGcgagcGGGagcCGGg -3'
miRNA:   3'- -GCC-CAG-GGCAGGUGAGGC-----UCCa--GCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.