miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 5' -61.5 NC_002512.2 + 8701 1.06 0.002888
Target:  5'- uCGGGUCCCGUCCACUCCGAGGUCGGUc -3'
miRNA:   3'- -GCCCAGGGCAGGUGAGGCUCCAGCCA- -5'
9193 5' -61.5 NC_002512.2 + 17383 0.78 0.205352
Target:  5'- uCGuGGUCCgCGUCCAgcCCGAGGUCGGa -3'
miRNA:   3'- -GC-CCAGG-GCAGGUgaGGCUCCAGCCa -5'
9193 5' -61.5 NC_002512.2 + 152480 0.77 0.257199
Target:  5'- cCGGGUCCUGUgacgcgacggcgCCACggguggagcguUCCGGGGUCGGg -3'
miRNA:   3'- -GCCCAGGGCA------------GGUG-----------AGGCUCCAGCCa -5'
9193 5' -61.5 NC_002512.2 + 227086 0.77 0.235275
Target:  5'- cCGGGUCCCGccggCCGCcggCCG-GGUCGGg -3'
miRNA:   3'- -GCCCAGGGCa---GGUGa--GGCuCCAGCCa -5'
9193 5' -61.5 NC_002512.2 + 214794 0.74 0.361623
Target:  5'- cCGGGUCCCcuggucgcggagGUCCGuCUCCGAGaGUCGcGg -3'
miRNA:   3'- -GCCCAGGG------------CAGGU-GAGGCUC-CAGC-Ca -5'
9193 5' -61.5 NC_002512.2 + 217765 0.74 0.369049
Target:  5'- cCGGG-CCCGUCCcCgucgCCGGGGUCGcGg -3'
miRNA:   3'- -GCCCaGGGCAGGuGa---GGCUCCAGC-Ca -5'
9193 5' -61.5 NC_002512.2 + 121055 0.74 0.384213
Target:  5'- cCGGGUaCCCG-CCGC-CCGAGGcgCGGa -3'
miRNA:   3'- -GCCCA-GGGCaGGUGaGGCUCCa-GCCa -5'
9193 5' -61.5 NC_002512.2 + 153272 0.74 0.384213
Target:  5'- gCGGGUCCUGgucggcUgGCUCCGcuGGGUCGGUc -3'
miRNA:   3'- -GCCCAGGGCa-----GgUGAGGC--UCCAGCCA- -5'
9193 5' -61.5 NC_002512.2 + 223025 0.73 0.432105
Target:  5'- aCGGGUCgUCGcCCACUCCggcGAGGUcCGGg -3'
miRNA:   3'- -GCCCAG-GGCaGGUGAGG---CUCCA-GCCa -5'
9193 5' -61.5 NC_002512.2 + 193812 0.72 0.457322
Target:  5'- -uGGUCgCG-CCGCUUCGGGGUCGGc -3'
miRNA:   3'- gcCCAGgGCaGGUGAGGCUCCAGCCa -5'
9193 5' -61.5 NC_002512.2 + 154677 0.71 0.50998
Target:  5'- uCGGGcgaCCGUCCGCUCCGAG--CGGc -3'
miRNA:   3'- -GCCCag-GGCAGGUGAGGCUCcaGCCa -5'
9193 5' -61.5 NC_002512.2 + 153471 0.71 0.50998
Target:  5'- uGGGUCUgcguuaccguCGUCCAgUCCGGGGaCGGc -3'
miRNA:   3'- gCCCAGG----------GCAGGUgAGGCUCCaGCCa -5'
9193 5' -61.5 NC_002512.2 + 1600 0.71 0.498343
Target:  5'- cCGGGUCCCGUCCucccucucccacccGgUCCGcGGUCaGUc -3'
miRNA:   3'- -GCCCAGGGCAGG--------------UgAGGCuCCAGcCA- -5'
9193 5' -61.5 NC_002512.2 + 113717 0.71 0.536333
Target:  5'- uGGGUCCCGacgcgggcggcgaUCUGCgggCCGAGGUgcgCGGUc -3'
miRNA:   3'- gCCCAGGGC-------------AGGUGa--GGCUCCA---GCCA- -5'
9193 5' -61.5 NC_002512.2 + 191334 0.71 0.5281
Target:  5'- gCGGGUgCCGUCCGCgaCGGGGguaGGUc -3'
miRNA:   3'- -GCCCAgGGCAGGUGagGCUCCag-CCA- -5'
9193 5' -61.5 NC_002512.2 + 155058 0.71 0.546454
Target:  5'- aGGGUCuCCGUUCGCgCgCGGGGUCGuGa -3'
miRNA:   3'- gCCCAG-GGCAGGUGaG-GCUCCAGC-Ca -5'
9193 5' -61.5 NC_002512.2 + 113186 0.71 0.5281
Target:  5'- cCGGcGUCgCCGUCCGCUCCGcgagcGGGagcCGGg -3'
miRNA:   3'- -GCC-CAG-GGCAGGUGAGGC-----UCCa--GCCa -5'
9193 5' -61.5 NC_002512.2 + 200037 0.7 0.602551
Target:  5'- gCGGGUucUCCGgaucCCGCUCCagauagugcaucGGGGUCGGg -3'
miRNA:   3'- -GCCCA--GGGCa---GGUGAGG------------CUCCAGCCa -5'
9193 5' -61.5 NC_002512.2 + 166612 0.7 0.593123
Target:  5'- gGGGUCCCagggcUCCGCgUCCGGGaacGUCGGc -3'
miRNA:   3'- gCCCAGGGc----AGGUG-AGGCUC---CAGCCa -5'
9193 5' -61.5 NC_002512.2 + 194634 0.7 0.555708
Target:  5'- gCGGGggaccugCCCGUCCucuuCUCCGAucGGgCGGUc -3'
miRNA:   3'- -GCCCa------GGGCAGGu---GAGGCU--CCaGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.