miRNA display CGI


Results 21 - 40 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9198 5' -57.6 NC_002512.2 + 59480 0.66 0.921376
Target:  5'- cUCGCCaGCGGguCUCGAGcGGCCUGGa- -3'
miRNA:   3'- aGGUGGaCGUC--GAGCUC-CUGGACUgg -5'
9198 5' -57.6 NC_002512.2 + 59571 0.66 0.921376
Target:  5'- aCCugCUGCAGCUCcacuucaAGGACau--CCa -3'
miRNA:   3'- aGGugGACGUCGAGc------UCCUGgacuGG- -5'
9198 5' -57.6 NC_002512.2 + 61450 0.71 0.699388
Target:  5'- aUCCugCUgGUGGCcCG-GGACCUGuACCg -3'
miRNA:   3'- -AGGugGA-CGUCGaGCuCCUGGAC-UGG- -5'
9198 5' -57.6 NC_002512.2 + 61539 0.67 0.871637
Target:  5'- gUCCACCUcGguGCggaUCGAcGugCUGAUCc -3'
miRNA:   3'- -AGGUGGA-CguCG---AGCUcCugGACUGG- -5'
9198 5' -57.6 NC_002512.2 + 62148 0.66 0.906718
Target:  5'- -aCGCCcgGCAGCUccucgccccgcucgaCGAGaGACCgguaGACCg -3'
miRNA:   3'- agGUGGa-CGUCGA---------------GCUC-CUGGa---CUGG- -5'
9198 5' -57.6 NC_002512.2 + 62287 0.66 0.914233
Target:  5'- cCCGCCUgGCAGcCUgGAuGGAUCUccgucaccuguaucGACCa -3'
miRNA:   3'- aGGUGGA-CGUC-GAgCU-CCUGGA--------------CUGG- -5'
9198 5' -57.6 NC_002512.2 + 68922 0.67 0.864485
Target:  5'- gCCGCC-GCGGcCUCGGGGGgauccccccuCgUGACCc -3'
miRNA:   3'- aGGUGGaCGUC-GAGCUCCU----------GgACUGG- -5'
9198 5' -57.6 NC_002512.2 + 69067 0.66 0.925068
Target:  5'- cCCGCCUGCugguGC-CGGGGcggcugguacugcuGCCgUGGCUg -3'
miRNA:   3'- aGGUGGACGu---CGaGCUCC--------------UGG-ACUGG- -5'
9198 5' -57.6 NC_002512.2 + 71713 0.69 0.809326
Target:  5'- aCCACgaGCcGCguccCGAGGGCCUGGa- -3'
miRNA:   3'- aGGUGgaCGuCGa---GCUCCUGGACUgg -5'
9198 5' -57.6 NC_002512.2 + 74564 0.74 0.537338
Target:  5'- gUCCGCCgcgaccugggcgcucUGguGCUCGAGG-CCggGGCCc -3'
miRNA:   3'- -AGGUGG---------------ACguCGAGCUCCuGGa-CUGG- -5'
9198 5' -57.6 NC_002512.2 + 76464 0.67 0.871637
Target:  5'- gCCG-CUGCcGUuccgacagUCGAGGACCUGgGCCu -3'
miRNA:   3'- aGGUgGACGuCG--------AGCUCCUGGAC-UGG- -5'
9198 5' -57.6 NC_002512.2 + 77044 0.69 0.798208
Target:  5'- uUCCGCCUGgGGaccgCGAGGcccgauccuuuucgACCgggGACCg -3'
miRNA:   3'- -AGGUGGACgUCga--GCUCC--------------UGGa--CUGG- -5'
9198 5' -57.6 NC_002512.2 + 81422 0.74 0.533525
Target:  5'- cCCGCCgucGCGGCUCcgucccgcgGGGGGCCcGGCCc -3'
miRNA:   3'- aGGUGGa--CGUCGAG---------CUCCUGGaCUGG- -5'
9198 5' -57.6 NC_002512.2 + 83258 0.66 0.921376
Target:  5'- gCCGCCaGCAGCUgGcGGAUCgucGGCa -3'
miRNA:   3'- aGGUGGaCGUCGAgCuCCUGGa--CUGg -5'
9198 5' -57.6 NC_002512.2 + 83785 0.67 0.891882
Target:  5'- gCCGCCgccGCcGC-CGAGGACCgcgucgGGCg -3'
miRNA:   3'- aGGUGGa--CGuCGaGCUCCUGGa-----CUGg -5'
9198 5' -57.6 NC_002512.2 + 88014 0.66 0.915914
Target:  5'- aCgGCUcGCGGCguuccaGAGGACCguguUGGCCg -3'
miRNA:   3'- aGgUGGaCGUCGag----CUCCUGG----ACUGG- -5'
9198 5' -57.6 NC_002512.2 + 90377 0.7 0.718615
Target:  5'- gCCAgggUCUGCAcGCUCGAGGuCUUG-CCg -3'
miRNA:   3'- aGGU---GGACGU-CGAGCUCCuGGACuGG- -5'
9198 5' -57.6 NC_002512.2 + 90947 0.66 0.926618
Target:  5'- gCCGCCgucgugguggUGguGCUCGugcuGGGAcuguuCCUGAUCg -3'
miRNA:   3'- aGGUGG----------ACguCGAGC----UCCU-----GGACUGG- -5'
9198 5' -57.6 NC_002512.2 + 91342 0.66 0.910232
Target:  5'- cUCCGcuCCUGCcagcuGCUCGAcGGGCUgGACg -3'
miRNA:   3'- -AGGU--GGACGu----CGAGCU-CCUGGaCUGg -5'
9198 5' -57.6 NC_002512.2 + 92144 0.67 0.87859
Target:  5'- --gGCgCUGCGGCgcgUGcAGGACCUG-CCg -3'
miRNA:   3'- aggUG-GACGUCGa--GC-UCCUGGACuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.