miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9198 5' -57.6 NC_002512.2 + 4062 0.76 0.39974
Target:  5'- aUCC-CCcGCGGCUCGAGGucCCaGGCCa -3'
miRNA:   3'- -AGGuGGaCGUCGAGCUCCu-GGaCUGG- -5'
9198 5' -57.6 NC_002512.2 + 6901 0.69 0.792123
Target:  5'- cUCC-CCgGCAGgUCGAGGAa--GACCg -3'
miRNA:   3'- -AGGuGGaCGUCgAGCUCCUggaCUGG- -5'
9198 5' -57.6 NC_002512.2 + 8157 0.74 0.51461
Target:  5'- gUCCGCCagGC-GCUCGGGGAUCUcGGCg -3'
miRNA:   3'- -AGGUGGa-CGuCGAGCUCCUGGA-CUGg -5'
9198 5' -57.6 NC_002512.2 + 9087 0.68 0.849606
Target:  5'- aCCACgaGCGGgUCGAGGAC--GAUCc -3'
miRNA:   3'- aGGUGgaCGUCgAGCUCCUGgaCUGG- -5'
9198 5' -57.6 NC_002512.2 + 11408 0.68 0.817708
Target:  5'- aCgACCcGCGGgaCGAGGAgaUGACCg -3'
miRNA:   3'- aGgUGGaCGUCgaGCUCCUggACUGG- -5'
9198 5' -57.6 NC_002512.2 + 11676 0.66 0.910232
Target:  5'- cCCGCC-GCGGCccgaggCGGGGGCCcgaggGGCg -3'
miRNA:   3'- aGGUGGaCGUCGa-----GCUCCUGGa----CUGg -5'
9198 5' -57.6 NC_002512.2 + 13145 0.69 0.765338
Target:  5'- uUCgACCggGC-GCUCGcGGACCUGcgcGCCa -3'
miRNA:   3'- -AGgUGGa-CGuCGAGCuCCUGGAC---UGG- -5'
9198 5' -57.6 NC_002512.2 + 13178 1.13 0.001847
Target:  5'- aUCCACCUGCAGCUCGAGGACCUGACCg -3'
miRNA:   3'- -AGGUGGACGUCGAGCUCCUGGACUGG- -5'
9198 5' -57.6 NC_002512.2 + 23799 0.67 0.891882
Target:  5'- cUCCcgaACCUGCAGCUgcacCGcGGcACCcaggUGGCCa -3'
miRNA:   3'- -AGG---UGGACGUCGA----GCuCC-UGG----ACUGG- -5'
9198 5' -57.6 NC_002512.2 + 24495 0.67 0.891882
Target:  5'- uUCCGCUgcGCcGC-CGccuuccuGGGCCUGACCg -3'
miRNA:   3'- -AGGUGGa-CGuCGaGCu------CCUGGACUGG- -5'
9198 5' -57.6 NC_002512.2 + 26532 0.66 0.928652
Target:  5'- gCgGCCUggucgGCAGCUCGcccgAGGGcugcaagaucgcggcCCUGGCCu -3'
miRNA:   3'- aGgUGGA-----CGUCGAGC----UCCU---------------GGACUGG- -5'
9198 5' -57.6 NC_002512.2 + 29736 0.67 0.891882
Target:  5'- cCUACCgugGCGGCgcgCGAGGggGCCcGGCg -3'
miRNA:   3'- aGGUGGa--CGUCGa--GCUCC--UGGaCUGg -5'
9198 5' -57.6 NC_002512.2 + 30779 0.72 0.611177
Target:  5'- aCCugCUGCAGagggugaaCGuGGACCUGGCg -3'
miRNA:   3'- aGGugGACGUCga------GCuCCUGGACUGg -5'
9198 5' -57.6 NC_002512.2 + 31230 0.68 0.849606
Target:  5'- gCCACgCUGCuGCguuucgUGAGGGCgCUGAUg -3'
miRNA:   3'- aGGUG-GACGuCGa-----GCUCCUG-GACUGg -5'
9198 5' -57.6 NC_002512.2 + 33685 0.68 0.841889
Target:  5'- -gCGCCggaGGCUCGccaGGGACCcGGCCg -3'
miRNA:   3'- agGUGGacgUCGAGC---UCCUGGaCUGG- -5'
9198 5' -57.6 NC_002512.2 + 40835 0.68 0.849606
Target:  5'- gCCGCCgGCcGCUcCGAGGACauuACCg -3'
miRNA:   3'- aGGUGGaCGuCGA-GCUCCUGgacUGG- -5'
9198 5' -57.6 NC_002512.2 + 45369 0.67 0.87859
Target:  5'- cCCGCgaCUGCuGCgaCGAGGACgCgGGCCg -3'
miRNA:   3'- aGGUG--GACGuCGa-GCUCCUG-GaCUGG- -5'
9198 5' -57.6 NC_002512.2 + 48724 0.76 0.391594
Target:  5'- cCUACCU---GCUgGAGGACCUGGCCg -3'
miRNA:   3'- aGGUGGAcguCGAgCUCCUGGACUGG- -5'
9198 5' -57.6 NC_002512.2 + 50727 0.67 0.891882
Target:  5'- gUCGCCagGgAGUUCGAGGAgCUGcuggGCCu -3'
miRNA:   3'- aGGUGGa-CgUCGAGCUCCUgGAC----UGG- -5'
9198 5' -57.6 NC_002512.2 + 59450 0.67 0.88534
Target:  5'- aUCUGCCUGCGGC---GGGACCcgcagcagaagUGGCUg -3'
miRNA:   3'- -AGGUGGACGUCGagcUCCUGG-----------ACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.