miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9198 5' -57.6 NC_002512.2 + 13178 1.13 0.001847
Target:  5'- aUCCACCUGCAGCUCGAGGACCUGACCg -3'
miRNA:   3'- -AGGUGGACGUCGAGCUCCUGGACUGG- -5'
9198 5' -57.6 NC_002512.2 + 128589 0.8 0.260694
Target:  5'- gCCGCUgagcuccaUGCGGCUCGAGGaacugaagaucauccGCCUGGCCu -3'
miRNA:   3'- aGGUGG--------ACGUCGAGCUCC---------------UGGACUGG- -5'
9198 5' -57.6 NC_002512.2 + 95143 0.79 0.28938
Target:  5'- gUCCGCCccgGCGGgUCGAGGACCgGAgCCu -3'
miRNA:   3'- -AGGUGGa--CGUCgAGCUCCUGGaCU-GG- -5'
9198 5' -57.6 NC_002512.2 + 97636 0.79 0.28938
Target:  5'- aCCGCCUgacGCAGCUCGAGaACCUcGCCg -3'
miRNA:   3'- aGGUGGA---CGUCGAGCUCcUGGAcUGG- -5'
9198 5' -57.6 NC_002512.2 + 185963 0.79 0.295935
Target:  5'- -gCGCCUGgAGCUCGAGGGCaacGGCCu -3'
miRNA:   3'- agGUGGACgUCGAGCUCCUGga-CUGG- -5'
9198 5' -57.6 NC_002512.2 + 214251 0.77 0.345045
Target:  5'- gCCGCCcGCGGC-CGAGGaguuccgcugucGCCUGGCCu -3'
miRNA:   3'- aGGUGGaCGUCGaGCUCC------------UGGACUGG- -5'
9198 5' -57.6 NC_002512.2 + 116440 0.77 0.367814
Target:  5'- gUCCACCUGaucgccaccCAGCUCGGGGACggGGCg -3'
miRNA:   3'- -AGGUGGAC---------GUCGAGCUCCUGgaCUGg -5'
9198 5' -57.6 NC_002512.2 + 48724 0.76 0.391594
Target:  5'- cCUACCU---GCUgGAGGACCUGGCCg -3'
miRNA:   3'- aGGUGGAcguCGAgCUCCUGGACUGG- -5'
9198 5' -57.6 NC_002512.2 + 211122 0.76 0.398921
Target:  5'- gUCCaACCUGCgcgucgaGGC-CGAGGACCUGGgCg -3'
miRNA:   3'- -AGG-UGGACG-------UCGaGCUCCUGGACUgG- -5'
9198 5' -57.6 NC_002512.2 + 4062 0.76 0.39974
Target:  5'- aUCC-CCcGCGGCUCGAGGucCCaGGCCa -3'
miRNA:   3'- -AGGuGGaCGUCGAGCUCCu-GGaCUGG- -5'
9198 5' -57.6 NC_002512.2 + 126513 0.76 0.424816
Target:  5'- -gCGCCUcgGCGGCUCcGGcGGCCUGACCu -3'
miRNA:   3'- agGUGGA--CGUCGAGcUC-CUGGACUGG- -5'
9198 5' -57.6 NC_002512.2 + 139185 0.75 0.468613
Target:  5'- aCC-CCUGuCAcGCcgacgccgUCGAGGACCUGGCCc -3'
miRNA:   3'- aGGuGGAC-GU-CG--------AGCUCCUGGACUGG- -5'
9198 5' -57.6 NC_002512.2 + 201843 0.75 0.486771
Target:  5'- uUCCgcgGCCgGCAGCUCGccuGGGGCCUGcgguCCg -3'
miRNA:   3'- -AGG---UGGaCGUCGAGC---UCCUGGACu---GG- -5'
9198 5' -57.6 NC_002512.2 + 98657 0.74 0.502463
Target:  5'- gCCACC-GCGGCcuccgaccgcgacgUCGAGcGCCUGGCCg -3'
miRNA:   3'- aGGUGGaCGUCG--------------AGCUCcUGGACUGG- -5'
9198 5' -57.6 NC_002512.2 + 156570 0.74 0.51461
Target:  5'- gCCugCUGC-GCUCGgugcgcuucgucAGcGGCCUGACCg -3'
miRNA:   3'- aGGugGACGuCGAGC------------UC-CUGGACUGG- -5'
9198 5' -57.6 NC_002512.2 + 215171 0.74 0.51461
Target:  5'- gCCGuCCUGCuGCUCGGGGAgCgGACg -3'
miRNA:   3'- aGGU-GGACGuCGAGCUCCUgGaCUGg -5'
9198 5' -57.6 NC_002512.2 + 8157 0.74 0.51461
Target:  5'- gUCCGCCagGC-GCUCGGGGAUCUcGGCg -3'
miRNA:   3'- -AGGUGGa-CGuCGAGCUCCUGGA-CUGg -5'
9198 5' -57.6 NC_002512.2 + 81422 0.74 0.533525
Target:  5'- cCCGCCgucGCGGCUCcgucccgcgGGGGGCCcGGCCc -3'
miRNA:   3'- aGGUGGa--CGUCGAG---------CUCCUGGaCUGG- -5'
9198 5' -57.6 NC_002512.2 + 170060 0.74 0.533525
Target:  5'- gCCGCCgccGCGGC-CGccuucuuGGGCCUGGCCu -3'
miRNA:   3'- aGGUGGa--CGUCGaGCu------CCUGGACUGG- -5'
9198 5' -57.6 NC_002512.2 + 74564 0.74 0.537338
Target:  5'- gUCCGCCgcgaccugggcgcucUGguGCUCGAGG-CCggGGCCc -3'
miRNA:   3'- -AGGUGG---------------ACguCGAGCUCCuGGa-CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.