miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9198 5' -57.6 NC_002512.2 + 13178 1.13 0.001847
Target:  5'- aUCCACCUGCAGCUCGAGGACCUGACCg -3'
miRNA:   3'- -AGGUGGACGUCGAGCUCCUGGACUGG- -5'
9198 5' -57.6 NC_002512.2 + 133858 0.71 0.703252
Target:  5'- -aCACCgaggacguccugggGCGGCUCGAGGAgCggcucGGCCg -3'
miRNA:   3'- agGUGGa-------------CGUCGAGCUCCUgGa----CUGG- -5'
9198 5' -57.6 NC_002512.2 + 134370 0.7 0.718615
Target:  5'- gUCCACgaGCuGUUCGAGGuCCggGACg -3'
miRNA:   3'- -AGGUGgaCGuCGAGCUCCuGGa-CUGg -5'
9198 5' -57.6 NC_002512.2 + 26532 0.66 0.928652
Target:  5'- gCgGCCUggucgGCAGCUCGcccgAGGGcugcaagaucgcggcCCUGGCCu -3'
miRNA:   3'- aGgUGGA-----CGUCGAGC----UCCU---------------GGACUGG- -5'
9198 5' -57.6 NC_002512.2 + 126513 0.76 0.424816
Target:  5'- -gCGCCUcgGCGGCUCcGGcGGCCUGACCu -3'
miRNA:   3'- agGUGGA--CGUCGAGcUC-CUGGACUGG- -5'
9198 5' -57.6 NC_002512.2 + 139185 0.75 0.468613
Target:  5'- aCC-CCUGuCAcGCcgacgccgUCGAGGACCUGGCCc -3'
miRNA:   3'- aGGuGGAC-GU-CG--------AGCUCCUGGACUGG- -5'
9198 5' -57.6 NC_002512.2 + 8157 0.74 0.51461
Target:  5'- gUCCGCCagGC-GCUCGGGGAUCUcGGCg -3'
miRNA:   3'- -AGGUGGa-CGuCGAGCUCCUGGA-CUGg -5'
9198 5' -57.6 NC_002512.2 + 81422 0.74 0.533525
Target:  5'- cCCGCCgucGCGGCUCcgucccgcgGGGGGCCcGGCCc -3'
miRNA:   3'- aGGUGGa--CGUCGAG---------CUCCUGGaCUGG- -5'
9198 5' -57.6 NC_002512.2 + 96747 0.73 0.591553
Target:  5'- gCCGCCUGCuacguGCUCGAGuuCaaGACCa -3'
miRNA:   3'- aGGUGGACGu----CGAGCUCcuGgaCUGG- -5'
9198 5' -57.6 NC_002512.2 + 61450 0.71 0.699388
Target:  5'- aUCCugCUgGUGGCcCG-GGACCUGuACCg -3'
miRNA:   3'- -AGGugGA-CGUCGaGCuCCUGGAC-UGG- -5'
9198 5' -57.6 NC_002512.2 + 97163 0.72 0.640705
Target:  5'- -gCGCCUGCGGCagcgggcCGAGGAUCUcGCCc -3'
miRNA:   3'- agGUGGACGUCGa------GCUCCUGGAcUGG- -5'
9198 5' -57.6 NC_002512.2 + 117976 0.73 0.552681
Target:  5'- cCCGCCuggccgUGCuGCUCGGGGugCUGgauuGCCu -3'
miRNA:   3'- aGGUGG------ACGuCGAGCUCCugGAC----UGG- -5'
9198 5' -57.6 NC_002512.2 + 97636 0.79 0.28938
Target:  5'- aCCGCCUgacGCAGCUCGAGaACCUcGCCg -3'
miRNA:   3'- aGGUGGA---CGUCGAGCUCcUGGAcUGG- -5'
9198 5' -57.6 NC_002512.2 + 97359 0.71 0.660371
Target:  5'- gCCGCCcGCGGagCGGGGACCgcggcGGCCg -3'
miRNA:   3'- aGGUGGaCGUCgaGCUCCUGGa----CUGG- -5'
9198 5' -57.6 NC_002512.2 + 48724 0.76 0.391594
Target:  5'- cCUACCU---GCUgGAGGACCUGGCCg -3'
miRNA:   3'- aGGUGGAcguCGAgCUCCUGGACUGG- -5'
9198 5' -57.6 NC_002512.2 + 113731 0.73 0.543075
Target:  5'- -gCGCCaGCGGCUCGGGGAUgUugccGACCa -3'
miRNA:   3'- agGUGGaCGUCGAGCUCCUGgA----CUGG- -5'
9198 5' -57.6 NC_002512.2 + 103171 0.71 0.679952
Target:  5'- -gCGCCcgGCgAGgaCGAGGACCUGAgCCu -3'
miRNA:   3'- agGUGGa-CG-UCgaGCUCCUGGACU-GG- -5'
9198 5' -57.6 NC_002512.2 + 128561 0.71 0.709032
Target:  5'- gUCCACCUucGaCGGCcucCGGGGGCC-GACCc -3'
miRNA:   3'- -AGGUGGA--C-GUCGa--GCUCCUGGaCUGG- -5'
9198 5' -57.6 NC_002512.2 + 4062 0.76 0.39974
Target:  5'- aUCC-CCcGCGGCUCGAGGucCCaGGCCa -3'
miRNA:   3'- -AGGuGGaCGUCGAGCUCCu-GGaCUGG- -5'
9198 5' -57.6 NC_002512.2 + 98657 0.74 0.502463
Target:  5'- gCCACC-GCGGCcuccgaccgcgacgUCGAGcGCCUGGCCg -3'
miRNA:   3'- aGGUGGaCGUCG--------------AGCUCcUGGACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.