miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9198 5' -57.6 NC_002512.2 + 26532 0.66 0.928652
Target:  5'- gCgGCCUggucgGCAGCUCGcccgAGGGcugcaagaucgcggcCCUGGCCu -3'
miRNA:   3'- aGgUGGA-----CGUCGAGC----UCCU---------------GGACUGG- -5'
9198 5' -57.6 NC_002512.2 + 62287 0.66 0.914233
Target:  5'- cCCGCCUgGCAGcCUgGAuGGAUCUccgucaccuguaucGACCa -3'
miRNA:   3'- aGGUGGA-CGUC-GAgCU-CCUGGA--------------CUGG- -5'
9198 5' -57.6 NC_002512.2 + 149117 0.66 0.910232
Target:  5'- cUCCuCCUcgAGCcgCGAGGACCcccggGACCc -3'
miRNA:   3'- -AGGuGGAcgUCGa-GCUCCUGGa----CUGG- -5'
9198 5' -57.6 NC_002512.2 + 116564 0.66 0.910232
Target:  5'- gCCGCCUGU-GCgaCGAGccccuCCUGGCCu -3'
miRNA:   3'- aGGUGGACGuCGa-GCUCcu---GGACUGG- -5'
9198 5' -57.6 NC_002512.2 + 91342 0.66 0.910232
Target:  5'- cUCCGcuCCUGCcagcuGCUCGAcGGGCUgGACg -3'
miRNA:   3'- -AGGU--GGACGu----CGAGCU-CCUGGaCUGg -5'
9198 5' -57.6 NC_002512.2 + 211441 0.66 0.910232
Target:  5'- uUCUGCCcGgAGCUCGGGcGCCUGcggcuGCCc -3'
miRNA:   3'- -AGGUGGaCgUCGAGCUCcUGGAC-----UGG- -5'
9198 5' -57.6 NC_002512.2 + 115023 0.66 0.906718
Target:  5'- cCCugCUGCGGCacgcggcccccugcuUCGugcugcGGACgCUGAUCg -3'
miRNA:   3'- aGGugGACGUCG---------------AGCu-----CCUG-GACUGG- -5'
9198 5' -57.6 NC_002512.2 + 143302 0.66 0.904331
Target:  5'- aCCAUC-GCGGCgagCGaAGGACg-GACCa -3'
miRNA:   3'- aGGUGGaCGUCGa--GC-UCCUGgaCUGG- -5'
9198 5' -57.6 NC_002512.2 + 133886 0.66 0.904331
Target:  5'- uUCCGCCUgGCGGUcgCGGcgccGGACgCcGACCg -3'
miRNA:   3'- -AGGUGGA-CGUCGa-GCU----CCUG-GaCUGG- -5'
9198 5' -57.6 NC_002512.2 + 118353 0.66 0.915356
Target:  5'- gCC-CCUGCcGCUUccugcagGAGGcCCUGACg -3'
miRNA:   3'- aGGuGGACGuCGAG-------CUCCuGGACUGg -5'
9198 5' -57.6 NC_002512.2 + 138583 0.66 0.915356
Target:  5'- aCCACgCUGCggaucgcGGC-CGGGGAgaCgCUGGCCa -3'
miRNA:   3'- aGGUG-GACG-------UCGaGCUCCU--G-GACUGG- -5'
9198 5' -57.6 NC_002512.2 + 192062 0.66 0.915914
Target:  5'- gCgACCUGUacGGCUCGGacgcGucCCUGACCc -3'
miRNA:   3'- aGgUGGACG--UCGAGCU----CcuGGACUGG- -5'
9198 5' -57.6 NC_002512.2 + 134082 0.66 0.926618
Target:  5'- aCCGgCUGCgcugggcgAGCUaCGAGGcgacgauaaGCCUGACg -3'
miRNA:   3'- aGGUgGACG--------UCGA-GCUCC---------UGGACUGg -5'
9198 5' -57.6 NC_002512.2 + 193261 0.66 0.921376
Target:  5'- -aCGCCUGCGcgcccuGcCUCGGcGACCUGugCu -3'
miRNA:   3'- agGUGGACGU------C-GAGCUcCUGGACugG- -5'
9198 5' -57.6 NC_002512.2 + 211604 0.66 0.921376
Target:  5'- cUCCGCCgagaAGCUCaaccuGGACCUcGCCu -3'
miRNA:   3'- -AGGUGGacg-UCGAGcu---CCUGGAcUGG- -5'
9198 5' -57.6 NC_002512.2 + 59480 0.66 0.921376
Target:  5'- cUCGCCaGCGGguCUCGAGcGGCCUGGa- -3'
miRNA:   3'- aGGUGGaCGUC--GAGCUC-CUGGACUgg -5'
9198 5' -57.6 NC_002512.2 + 221836 0.66 0.921376
Target:  5'- gUCCgACCcGCGGgggcgcCUCG-GGACCggGACCu -3'
miRNA:   3'- -AGG-UGGaCGUC------GAGCuCCUGGa-CUGG- -5'
9198 5' -57.6 NC_002512.2 + 148875 0.66 0.921376
Target:  5'- cUCCGCCUGCgcaAGCUgcugcagcccuaCGGGGccaGCCUGuuCu -3'
miRNA:   3'- -AGGUGGACG---UCGA------------GCUCC---UGGACugG- -5'
9198 5' -57.6 NC_002512.2 + 205045 0.66 0.915914
Target:  5'- gCCGCCgacCGGC-CGcGGGCCcgGACCu -3'
miRNA:   3'- aGGUGGac-GUCGaGCuCCUGGa-CUGG- -5'
9198 5' -57.6 NC_002512.2 + 97411 0.66 0.915914
Target:  5'- uUCCuCCUGgGGCUggccaCGAuGGugCUGGCg -3'
miRNA:   3'- -AGGuGGACgUCGA-----GCU-CCugGACUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.