miRNA display CGI


Results 21 - 40 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9198 5' -57.6 NC_002512.2 + 115752 0.69 0.783318
Target:  5'- cUCUGCCgGCuGCUCcuGGACCggUGGCCg -3'
miRNA:   3'- -AGGUGGaCGuCGAGcuCCUGG--ACUGG- -5'
9198 5' -57.6 NC_002512.2 + 134370 0.7 0.718615
Target:  5'- gUCCACgaGCuGUUCGAGGuCCggGACg -3'
miRNA:   3'- -AGGUGgaCGuCGAGCUCCuGGa-CUGg -5'
9198 5' -57.6 NC_002512.2 + 117976 0.73 0.552681
Target:  5'- cCCGCCuggccgUGCuGCUCGGGGugCUGgauuGCCu -3'
miRNA:   3'- aGGUGG------ACGuCGAGCUCCugGAC----UGG- -5'
9198 5' -57.6 NC_002512.2 + 4062 0.76 0.39974
Target:  5'- aUCC-CCcGCGGCUCGAGGucCCaGGCCa -3'
miRNA:   3'- -AGGuGGaCGUCGAGCUCCu-GGaCUGG- -5'
9198 5' -57.6 NC_002512.2 + 40835 0.68 0.849606
Target:  5'- gCCGCCgGCcGCUcCGAGGACauuACCg -3'
miRNA:   3'- aGGUGGaCGuCGA-GCUCCUGgacUGG- -5'
9198 5' -57.6 NC_002512.2 + 71713 0.69 0.809326
Target:  5'- aCCACgaGCcGCguccCGAGGGCCUGGa- -3'
miRNA:   3'- aGGUGgaCGuCGa---GCUCCUGGACUgg -5'
9198 5' -57.6 NC_002512.2 + 133858 0.71 0.703252
Target:  5'- -aCACCgaggacguccugggGCGGCUCGAGGAgCggcucGGCCg -3'
miRNA:   3'- agGUGGa-------------CGUCGAGCUCCUgGa----CUGG- -5'
9198 5' -57.6 NC_002512.2 + 48724 0.76 0.391594
Target:  5'- cCUACCU---GCUgGAGGACCUGGCCg -3'
miRNA:   3'- aGGUGGAcguCGAgCUCCUGGACUGG- -5'
9198 5' -57.6 NC_002512.2 + 124232 0.69 0.809326
Target:  5'- gUCugCUGCGGCUCGcccuACCUcGGCCg -3'
miRNA:   3'- aGGugGACGUCGAGCucc-UGGA-CUGG- -5'
9198 5' -57.6 NC_002512.2 + 97636 0.79 0.28938
Target:  5'- aCCGCCUgacGCAGCUCGAGaACCUcGCCg -3'
miRNA:   3'- aGGUGGA---CGUCGAGCUCcUGGAcUGG- -5'
9198 5' -57.6 NC_002512.2 + 128561 0.71 0.709032
Target:  5'- gUCCACCUucGaCGGCcucCGGGGGCC-GACCc -3'
miRNA:   3'- -AGGUGGA--C-GUCGa--GCUCCUGGaCUGG- -5'
9198 5' -57.6 NC_002512.2 + 6901 0.69 0.792123
Target:  5'- cUCC-CCgGCAGgUCGAGGAa--GACCg -3'
miRNA:   3'- -AGGuGGaCGUCgAGCUCCUggaCUGG- -5'
9198 5' -57.6 NC_002512.2 + 97359 0.71 0.660371
Target:  5'- gCCGCCcGCGGagCGGGGACCgcggcGGCCg -3'
miRNA:   3'- aGGUGGaCGUCgaGCUCCUGGa----CUGG- -5'
9198 5' -57.6 NC_002512.2 + 96747 0.73 0.591553
Target:  5'- gCCGCCUGCuacguGCUCGAGuuCaaGACCa -3'
miRNA:   3'- aGGUGGACGu----CGAGCUCcuGgaCUGG- -5'
9198 5' -57.6 NC_002512.2 + 8157 0.74 0.51461
Target:  5'- gUCCGCCagGC-GCUCGGGGAUCUcGGCg -3'
miRNA:   3'- -AGGUGGa-CGuCGAGCUCCUGGA-CUGg -5'
9198 5' -57.6 NC_002512.2 + 126513 0.76 0.424816
Target:  5'- -gCGCCUcgGCGGCUCcGGcGGCCUGACCu -3'
miRNA:   3'- agGUGGA--CGUCGAGcUC-CUGGACUGG- -5'
9198 5' -57.6 NC_002512.2 + 138011 0.68 0.860101
Target:  5'- gCCGCCgcccgcgccggacgGCGGcCUCGGGGGCaUGAgCCg -3'
miRNA:   3'- aGGUGGa-------------CGUC-GAGCUCCUGgACU-GG- -5'
9198 5' -57.6 NC_002512.2 + 137946 0.68 0.849606
Target:  5'- aUCACCUGCcugcggaacAGCUCGcGGAuguCCUGcguGCCg -3'
miRNA:   3'- aGGUGGACG---------UCGAGCuCCU---GGAC---UGG- -5'
9198 5' -57.6 NC_002512.2 + 33685 0.68 0.841889
Target:  5'- -gCGCCggaGGCUCGccaGGGACCcGGCCg -3'
miRNA:   3'- agGUGGacgUCGAGC---UCCUGGaCUGG- -5'
9198 5' -57.6 NC_002512.2 + 11408 0.68 0.817708
Target:  5'- aCgACCcGCGGgaCGAGGAgaUGACCg -3'
miRNA:   3'- aGgUGGaCGUCgaGCUCCUggACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.