miRNA display CGI


Results 21 - 25 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
92 3' -59.6 AC_000006.1 + 12041 0.68 0.261736
Target:  5'- gGGGGGUuucGCUCCGgucgGCCAGGGcGUCc -3'
miRNA:   3'- gUUCCCGuu-CGAGGCg---CGGUUCC-CGG- -5'
92 3' -59.6 AC_000006.1 + 16924 0.67 0.275603
Target:  5'- uGGGGGCAAgGCUguuguaagCCGUGCCcgaguAGGGUUu -3'
miRNA:   3'- gUUCCCGUU-CGA--------GGCGCGGu----UCCCGG- -5'
92 3' -59.6 AC_000006.1 + 30494 0.67 0.275603
Target:  5'- gCGAGGGgAA-CUUCGC-CCcGGGGCCc -3'
miRNA:   3'- -GUUCCCgUUcGAGGCGcGGuUCCCGG- -5'
92 3' -59.6 AC_000006.1 + 20401 0.66 0.318331
Target:  5'- ---cGGCAGcgaccaguagacuuGCUCCGCGCCGcaggugacguccGGGGUg -3'
miRNA:   3'- guucCCGUU--------------CGAGGCGCGGU------------UCCCGg -5'
92 3' -59.6 AC_000006.1 + 29765 1.11 0.000115
Target:  5'- cCAAGGGCAAGCUCCGCGCCAAGGGCCa -3'
miRNA:   3'- -GUUCCCGUUCGAGGCGCGGUUCCCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.