miRNA display CGI


Results 41 - 60 of 140 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9205 5' -55.1 NC_002512.2 + 107065 0.66 0.976494
Target:  5'- -gCGGCcucCAuCUCGUucucGGGGGCGGUCGGg -3'
miRNA:   3'- gaGCCGc--GU-GAGCG----UUUUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 41255 0.66 0.976494
Target:  5'- -cCGGCGCcCUUGCGGcccGAGCGcUCGu -3'
miRNA:   3'- gaGCCGCGuGAGCGUU---UUCGCcAGCu -5'
9205 5' -55.1 NC_002512.2 + 95957 0.66 0.975767
Target:  5'- -gCGGgGgGCUgaggcccggguuggCGCAGcGGCGGUCGGc -3'
miRNA:   3'- gaGCCgCgUGA--------------GCGUUuUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 81896 0.66 0.971333
Target:  5'- -gUGGUGUACUCGCGGA---GGUCGu -3'
miRNA:   3'- gaGCCGCGUGAGCGUUUucgCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 146088 0.66 0.974006
Target:  5'- -cCGGCGCGCccgaCGCGGuccucGGCGG-CGGc -3'
miRNA:   3'- gaGCCGCGUGa---GCGUUu----UCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 192643 0.66 0.971333
Target:  5'- -aCGGCaacgGCUCGCGGGGGCGGcugccccacUCGGa -3'
miRNA:   3'- gaGCCGcg--UGAGCGUUUUCGCC---------AGCU- -5'
9205 5' -55.1 NC_002512.2 + 170649 0.67 0.951073
Target:  5'- -cCGGCGC-CUCGCcu--GCGGUUu- -3'
miRNA:   3'- gaGCCGCGuGAGCGuuuuCGCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 84431 0.67 0.951073
Target:  5'- cCUCGGUcUugUCGUuGAGGCGGagGAu -3'
miRNA:   3'- -GAGCCGcGugAGCGuUUUCGCCagCU- -5'
9205 5' -55.1 NC_002512.2 + 124380 0.67 0.946949
Target:  5'- -aCGGCGUcCUgCGCGAGAGgcUGGUCGu -3'
miRNA:   3'- gaGCCGCGuGA-GCGUUUUC--GCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 106773 0.67 0.954977
Target:  5'- uCUCGGCccgcgGCACUgGUcgGGGUcggGGUCGAc -3'
miRNA:   3'- -GAGCCG-----CGUGAgCGuuUUCG---CCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 62297 0.67 0.946949
Target:  5'- -cCGG-GCG-UCGCAGAGGCGG-CGGa -3'
miRNA:   3'- gaGCCgCGUgAGCGUUUUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 67741 0.67 0.951073
Target:  5'- gUCGGCGUGCcggccUCGCGAGccGgGGUCGu -3'
miRNA:   3'- gAGCCGCGUG-----AGCGUUUu-CgCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 36869 0.67 0.950671
Target:  5'- --aGGCGUACUUGCAggugggcAGGGCGG-CGc -3'
miRNA:   3'- gagCCGCGUGAGCGU-------UUUCGCCaGCu -5'
9205 5' -55.1 NC_002512.2 + 170468 0.67 0.951073
Target:  5'- -aUGGCGCACaggUUGCAGc-GCGuGUCGAu -3'
miRNA:   3'- gaGCCGCGUG---AGCGUUuuCGC-CAGCU- -5'
9205 5' -55.1 NC_002512.2 + 89767 0.67 0.942156
Target:  5'- gUCGGCGCGCggGCAucugacaucggggAGAGCGucGUCGu -3'
miRNA:   3'- gAGCCGCGUGagCGU-------------UUUCGC--CAGCu -5'
9205 5' -55.1 NC_002512.2 + 86578 0.67 0.946525
Target:  5'- cCUUGGUccguccuuCGCUCGCcgcgauggucgggGGGAGCGGUCGGu -3'
miRNA:   3'- -GAGCCGc-------GUGAGCG-------------UUUUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 203453 0.67 0.958664
Target:  5'- gUCGGCGUcgACaCGCuguacGAGCGGUuCGAc -3'
miRNA:   3'- gAGCCGCG--UGaGCGuu---UUCGCCA-GCU- -5'
9205 5' -55.1 NC_002512.2 + 103660 0.67 0.954597
Target:  5'- cCUCGGCGgcCACgagcgccucgacgUCGCAGAgGGCGG-CGGa -3'
miRNA:   3'- -GAGCCGC--GUG-------------AGCGUUU-UCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 202140 0.67 0.946949
Target:  5'- uCUCGGcCGcCGC-CGCGGggcGGGUGGUCGu -3'
miRNA:   3'- -GAGCC-GC-GUGaGCGUU---UUCGCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 130249 0.67 0.950671
Target:  5'- -cCGGCGUGCUUGguGAggaucagGGCGGcCGGc -3'
miRNA:   3'- gaGCCGCGUGAGCguUU-------UCGCCaGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.