miRNA display CGI


Results 61 - 80 of 140 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9205 5' -55.1 NC_002512.2 + 170468 0.67 0.951073
Target:  5'- -aUGGCGCACaggUUGCAGc-GCGuGUCGAu -3'
miRNA:   3'- gaGCCGCGUG---AGCGUUuuCGC-CAGCU- -5'
9205 5' -55.1 NC_002512.2 + 67741 0.67 0.951073
Target:  5'- gUCGGCGUGCcggccUCGCGAGccGgGGUCGu -3'
miRNA:   3'- gAGCCGCGUG-----AGCGUUUu-CgCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 84431 0.67 0.951073
Target:  5'- cCUCGGUcUugUCGUuGAGGCGGagGAu -3'
miRNA:   3'- -GAGCCGcGugAGCGuUUUCGCCagCU- -5'
9205 5' -55.1 NC_002512.2 + 170649 0.67 0.951073
Target:  5'- -cCGGCGC-CUCGCcu--GCGGUUu- -3'
miRNA:   3'- gaGCCGCGuGAGCGuuuuCGCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 133374 0.67 0.951073
Target:  5'- -cCGGCGCgGCUCcCuccGGCGGUCGc -3'
miRNA:   3'- gaGCCGCG-UGAGcGuuuUCGCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 130249 0.67 0.950671
Target:  5'- -cCGGCGUGCUUGguGAggaucagGGCGGcCGGc -3'
miRNA:   3'- gaGCCGCGUGAGCguUU-------UCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 36869 0.67 0.950671
Target:  5'- --aGGCGUACUUGCAggugggcAGGGCGG-CGc -3'
miRNA:   3'- gagCCGCGUGAGCGU-------UUUCGCCaGCu -5'
9205 5' -55.1 NC_002512.2 + 202140 0.67 0.946949
Target:  5'- uCUCGGcCGcCGC-CGCGGggcGGGUGGUCGu -3'
miRNA:   3'- -GAGCC-GC-GUGaGCGUU---UUCGCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 124380 0.67 0.946949
Target:  5'- -aCGGCGUcCUgCGCGAGAGgcUGGUCGu -3'
miRNA:   3'- gaGCCGCGuGA-GCGUUUUC--GCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 62297 0.67 0.946949
Target:  5'- -cCGG-GCG-UCGCAGAGGCGG-CGGa -3'
miRNA:   3'- gaGCCgCGUgAGCGUUUUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 86578 0.67 0.946525
Target:  5'- cCUUGGUccguccuuCGCUCGCcgcgauggucgggGGGAGCGGUCGGu -3'
miRNA:   3'- -GAGCCGc-------GUGAGCG-------------UUUUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 62710 0.67 0.942603
Target:  5'- uCUUGaCGCGCagCGCGuc-GCGGUCGAc -3'
miRNA:   3'- -GAGCcGCGUGa-GCGUuuuCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 57307 0.67 0.942603
Target:  5'- -cCGGUcucGUACUCGCGGgcGCGGagGAa -3'
miRNA:   3'- gaGCCG---CGUGAGCGUUuuCGCCagCU- -5'
9205 5' -55.1 NC_002512.2 + 89767 0.67 0.942156
Target:  5'- gUCGGCGCGCggGCAucugacaucggggAGAGCGucGUCGu -3'
miRNA:   3'- gAGCCGCGUGagCGU-------------UUUCGC--CAGCu -5'
9205 5' -55.1 NC_002512.2 + 153048 0.68 0.93803
Target:  5'- gUCGGCGggagcggucccCGgUCGgGucGGCGGUCGAg -3'
miRNA:   3'- gAGCCGC-----------GUgAGCgUuuUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 227424 0.68 0.93803
Target:  5'- uCUCGcGCGCGggCGCGGGccGCGGUCa- -3'
miRNA:   3'- -GAGC-CGCGUgaGCGUUUu-CGCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 105677 0.68 0.936138
Target:  5'- -aCGGCGCgguACUCGCGGugccucuguccccGGCGGaCGAg -3'
miRNA:   3'- gaGCCGCG---UGAGCGUUu------------UCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 137214 0.68 0.933232
Target:  5'- -gCGGCGCGCccggCGCG--GGCGGcCGu -3'
miRNA:   3'- gaGCCGCGUGa---GCGUuuUCGCCaGCu -5'
9205 5' -55.1 NC_002512.2 + 221829 0.68 0.933232
Target:  5'- uCUCGGCGUccgACcCGCGGGGGCGccUCGGg -3'
miRNA:   3'- -GAGCCGCG---UGaGCGUUUUCGCc-AGCU- -5'
9205 5' -55.1 NC_002512.2 + 106231 0.68 0.933232
Target:  5'- -gCGGCGCGCgCGCGGGAaccGCGG-CGc -3'
miRNA:   3'- gaGCCGCGUGaGCGUUUU---CGCCaGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.