miRNA display CGI


Results 41 - 60 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9205 5' -55.1 NC_002512.2 + 99085 0.66 0.962139
Target:  5'- cCUCGGC-CAC-CGCGugcuGCGcGUCGGc -3'
miRNA:   3'- -GAGCCGcGUGaGCGUuuu-CGC-CAGCU- -5'
9205 5' -55.1 NC_002512.2 + 120776 0.66 0.962139
Target:  5'- aCUCGGCgGCcgUCgGCGGGGGCGG-CGGg -3'
miRNA:   3'- -GAGCCG-CGugAG-CGUUUUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 193881 0.66 0.962139
Target:  5'- -gCGGUGgACgaCGCGGGAGCgGGUCGc -3'
miRNA:   3'- gaGCCGCgUGa-GCGUUUUCG-CCAGCu -5'
9205 5' -55.1 NC_002512.2 + 38881 0.66 0.962139
Target:  5'- cCUCGGUccGCGCggGCAGuacGCGGUCu- -3'
miRNA:   3'- -GAGCCG--CGUGagCGUUuu-CGCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 217831 0.66 0.962139
Target:  5'- -aCGGCGgGCgguUCgGCAGAGGCGGcagCGGu -3'
miRNA:   3'- gaGCCGCgUG---AG-CGUUUUCGCCa--GCU- -5'
9205 5' -55.1 NC_002512.2 + 115457 0.66 0.962139
Target:  5'- gCUCGuuccGCGgACcgCGUggGAGCcGGUCGAg -3'
miRNA:   3'- -GAGC----CGCgUGa-GCGuuUUCG-CCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 19257 0.67 0.96008
Target:  5'- --aGGCGUACUCGCAGuugcccagccggaccAGGUGaUCGGa -3'
miRNA:   3'- gagCCGCGUGAGCGUU---------------UUCGCcAGCU- -5'
9205 5' -55.1 NC_002512.2 + 123827 0.67 0.958664
Target:  5'- --aGGCGCugUCGCAcGAucugcgcccGCGG-CGAc -3'
miRNA:   3'- gagCCGCGugAGCGUuUU---------CGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 116690 0.67 0.958664
Target:  5'- -cCGGCuccCGCUCGCG-GAGCGGaCGGc -3'
miRNA:   3'- gaGCCGc--GUGAGCGUuUUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 151576 0.67 0.958664
Target:  5'- -aCGGU-CGCUCGCAGucGCGGaaaCGAg -3'
miRNA:   3'- gaGCCGcGUGAGCGUUuuCGCCa--GCU- -5'
9205 5' -55.1 NC_002512.2 + 223639 0.67 0.958664
Target:  5'- gCUCGGCGgGCUCGuCAugcucuCGGUCu- -3'
miRNA:   3'- -GAGCCGCgUGAGC-GUuuuc--GCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 203453 0.67 0.958664
Target:  5'- gUCGGCGUcgACaCGCuguacGAGCGGUuCGAc -3'
miRNA:   3'- gAGCCGCG--UGaGCGuu---UUCGCCA-GCU- -5'
9205 5' -55.1 NC_002512.2 + 138673 0.67 0.958305
Target:  5'- -aCGGUGgACUCGCuGAacgugccccggguGGCGGUCu- -3'
miRNA:   3'- gaGCCGCgUGAGCGuUU-------------UCGCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 101976 0.67 0.958305
Target:  5'- -cCGGCGgGCUCGUGGccgauccGA-CGGUCGAg -3'
miRNA:   3'- gaGCCGCgUGAGCGUU-------UUcGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 88883 0.67 0.954977
Target:  5'- gUCGGuCGCcguccUUCGCGAucGCGGUCc- -3'
miRNA:   3'- gAGCC-GCGu----GAGCGUUuuCGCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 150287 0.67 0.954977
Target:  5'- -cCGGCGCugccGCcCGCGAAgaGGCGGagGAg -3'
miRNA:   3'- gaGCCGCG----UGaGCGUUU--UCGCCagCU- -5'
9205 5' -55.1 NC_002512.2 + 225282 0.67 0.954977
Target:  5'- cCUCGGCGUccguCUCGCGGcccGCGG-CGc -3'
miRNA:   3'- -GAGCCGCGu---GAGCGUUuu-CGCCaGCu -5'
9205 5' -55.1 NC_002512.2 + 104279 0.67 0.954977
Target:  5'- -cCGGCGUcuuuCUCGCGuccGGCGG-CGGg -3'
miRNA:   3'- gaGCCGCGu---GAGCGUuu-UCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 106773 0.67 0.954977
Target:  5'- uCUCGGCccgcgGCACUgGUcgGGGUcggGGUCGAc -3'
miRNA:   3'- -GAGCCG-----CGUGAgCGuuUUCG---CCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 103660 0.67 0.954597
Target:  5'- cCUCGGCGgcCACgagcgccucgacgUCGCAGAgGGCGG-CGGa -3'
miRNA:   3'- -GAGCCGC--GUG-------------AGCGUUU-UCGCCaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.