miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9205 5' -55.1 NC_002512.2 + 219811 0.66 0.971333
Target:  5'- --gGGaCGCGCggggCGCGAcAGGgGGUCGGu -3'
miRNA:   3'- gagCC-GCGUGa---GCGUU-UUCgCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 55529 0.66 0.971333
Target:  5'- uCUCGGC-CAUcCGCAucccGGCGGaCGAg -3'
miRNA:   3'- -GAGCCGcGUGaGCGUuu--UCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 81896 0.66 0.971333
Target:  5'- -gUGGUGUACUCGCGGA---GGUCGu -3'
miRNA:   3'- gaGCCGCGUGAGCGUUUucgCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 156579 0.66 0.971333
Target:  5'- gCUCGGUGCGCuUCGUc--AGCGGcCu- -3'
miRNA:   3'- -GAGCCGCGUG-AGCGuuuUCGCCaGcu -5'
9205 5' -55.1 NC_002512.2 + 113058 0.66 0.971333
Target:  5'- gUCGGagcCGCACgaggGCc-AGGCGGUCGAc -3'
miRNA:   3'- gAGCC---GCGUGag--CGuuUUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 12602 0.66 0.971333
Target:  5'- -cCGGCGCGCggucCGCAu-GGCGGa--- -3'
miRNA:   3'- gaGCCGCGUGa---GCGUuuUCGCCagcu -5'
9205 5' -55.1 NC_002512.2 + 148816 0.66 0.971333
Target:  5'- uCUCGGa--GCUCGUccuGGGGGCGGUCc- -3'
miRNA:   3'- -GAGCCgcgUGAGCG---UUUUCGCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 78550 0.66 0.970776
Target:  5'- -aUGGCGCcggccggGC-CGCGAGGGCGGauggaaaUCGAa -3'
miRNA:   3'- gaGCCGCG-------UGaGCGUUUUCGCC-------AGCU- -5'
9205 5' -55.1 NC_002512.2 + 219708 0.66 0.968468
Target:  5'- gUCGGCGCuCggggCGCGAGAGgCGGcCc- -3'
miRNA:   3'- gAGCCGCGuGa---GCGUUUUC-GCCaGcu -5'
9205 5' -55.1 NC_002512.2 + 74413 0.66 0.968468
Target:  5'- -aCGGUGCcgacgaACUCGCGGucGaCGGUCa- -3'
miRNA:   3'- gaGCCGCG------UGAGCGUUuuC-GCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 198029 0.66 0.968468
Target:  5'- --gGGaCGCGCgCGCGAGGggacGCGGUCGu -3'
miRNA:   3'- gagCC-GCGUGaGCGUUUU----CGCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 193558 0.66 0.968468
Target:  5'- --nGGCGCugUgGUggGAGgGGUgGGg -3'
miRNA:   3'- gagCCGCGugAgCGuuUUCgCCAgCU- -5'
9205 5' -55.1 NC_002512.2 + 110251 0.66 0.968171
Target:  5'- aUCGGCuuauaaaGCGCcgCGCuGGGGCGGgaggCGAg -3'
miRNA:   3'- gAGCCG-------CGUGa-GCGuUUUCGCCa---GCU- -5'
9205 5' -55.1 NC_002512.2 + 69906 0.66 0.965405
Target:  5'- cCUCGuaGCACUgGU---AGCaGGUCGAg -3'
miRNA:   3'- -GAGCcgCGUGAgCGuuuUCG-CCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 21060 0.66 0.965405
Target:  5'- -gCGGCGCGUgagggCGCAcgGGCGG-CGGu -3'
miRNA:   3'- gaGCCGCGUGa----GCGUuuUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 85284 0.66 0.965405
Target:  5'- -gCGGCGCGgacCUCGUgcGAGgGGaUCGAc -3'
miRNA:   3'- gaGCCGCGU---GAGCGuuUUCgCC-AGCU- -5'
9205 5' -55.1 NC_002512.2 + 91949 0.66 0.965405
Target:  5'- uUgGGCGCGaUCGCcAGGGCGGagCGGc -3'
miRNA:   3'- gAgCCGCGUgAGCGuUUUCGCCa-GCU- -5'
9205 5' -55.1 NC_002512.2 + 134326 0.66 0.965405
Target:  5'- -cCGGCGCcgacggACUCGCc---GCGGcCGAg -3'
miRNA:   3'- gaGCCGCG------UGAGCGuuuuCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 31795 0.66 0.965405
Target:  5'- aCUCGGCG-ACggggagaCGcCGGGGcGCGGUCGAg -3'
miRNA:   3'- -GAGCCGCgUGa------GC-GUUUU-CGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 139788 0.66 0.965088
Target:  5'- -cCGGCGCACccUCcaggccgGCGGGGGCcucGGUCGGg -3'
miRNA:   3'- gaGCCGCGUG--AG-------CGUUUUCG---CCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.