miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9205 5' -55.1 NC_002512.2 + 15483 0.72 0.783303
Target:  5'- -gCGGCGCGCUCcgGCccGAAGUGGcCGAa -3'
miRNA:   3'- gaGCCGCGUGAG--CGu-UUUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 53230 0.71 0.809709
Target:  5'- --aGGCGCGCUgGCGGGAGCuGGU-GAu -3'
miRNA:   3'- gagCCGCGUGAgCGUUUUCG-CCAgCU- -5'
9205 5' -55.1 NC_002512.2 + 79945 0.71 0.809709
Target:  5'- -gCGGCGCggggguccgccuGC-CGuCGGAAGCGGUCGGc -3'
miRNA:   3'- gaGCCGCG------------UGaGC-GUUUUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 82969 0.71 0.818214
Target:  5'- -gCGGCGCACggCGCGGAAGaC-GUCGGc -3'
miRNA:   3'- gaGCCGCGUGa-GCGUUUUC-GcCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 102284 0.71 0.818214
Target:  5'- gCUCGGCGCGCgucgacCGCcAGGGCGacGUCGc -3'
miRNA:   3'- -GAGCCGCGUGa-----GCGuUUUCGC--CAGCu -5'
9205 5' -55.1 NC_002512.2 + 96303 0.71 0.818214
Target:  5'- -cCGGCcCGCUCGgGuccccGGCGGUCGAu -3'
miRNA:   3'- gaGCCGcGUGAGCgUuu---UCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 25873 0.7 0.834732
Target:  5'- gUCGGCccGCACgaaGCcgaAGAGGCGGUCGu -3'
miRNA:   3'- gAGCCG--CGUGag-CG---UUUUCGCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 221531 0.7 0.834732
Target:  5'- cCUCGGCGCucccgccuaccGCUaCGCGGAcccGCGGUCu- -3'
miRNA:   3'- -GAGCCGCG-----------UGA-GCGUUUu--CGCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 99932 0.7 0.842731
Target:  5'- aUCGcGuCGCAgaCGCAGAAGaGGUCGAa -3'
miRNA:   3'- gAGC-C-GCGUgaGCGUUUUCgCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 126765 0.7 0.858174
Target:  5'- cCUCGGgGCGCg-GCGGcGGCGG-CGAc -3'
miRNA:   3'- -GAGCCgCGUGagCGUUuUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 131213 0.7 0.865606
Target:  5'- -gCGGCcagGCGCUCGaCGuc-GCGGUCGGa -3'
miRNA:   3'- gaGCCG---CGUGAGC-GUuuuCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 216553 0.7 0.865606
Target:  5'- -gCGGCGCGCgaaCGCAGcauGCGG-CGGg -3'
miRNA:   3'- gaGCCGCGUGa--GCGUUuu-CGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 54233 0.69 0.87917
Target:  5'- uUCGaGaCGCACUCGCAcguccgcagcggcAGGGCGG-CGGc -3'
miRNA:   3'- gAGC-C-GCGUGAGCGU-------------UUUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 193524 0.69 0.879863
Target:  5'- -aCGGUGCACUCGUucugacGGAGUccgcggGGUCGGg -3'
miRNA:   3'- gaGCCGCGUGAGCGu-----UUUCG------CCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 147533 0.69 0.886006
Target:  5'- -cCGGCGCGaggCGCGAAacgcuuaAGCGGUgGGu -3'
miRNA:   3'- gaGCCGCGUga-GCGUUU-------UCGCCAgCU- -5'
9205 5' -55.1 NC_002512.2 + 136082 0.69 0.886678
Target:  5'- -gCGGCGUuccugcugcuGCUCGCGcuGGCGG-CGGc -3'
miRNA:   3'- gaGCCGCG----------UGAGCGUuuUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 164248 0.69 0.886678
Target:  5'- uUCGGCGCcgUgGCGGGGGCcgucgGGUCGAu -3'
miRNA:   3'- gAGCCGCGugAgCGUUUUCG-----CCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 80579 0.69 0.886678
Target:  5'- -gCGGCGaGCcCGCGc-GGCGGUCGAc -3'
miRNA:   3'- gaGCCGCgUGaGCGUuuUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 122032 0.69 0.893278
Target:  5'- aUCGGCGCucgCGCAcgcccGGGGCGGcgUCGGc -3'
miRNA:   3'- gAGCCGCGugaGCGU-----UUUCGCC--AGCU- -5'
9205 5' -55.1 NC_002512.2 + 92015 0.69 0.893278
Target:  5'- -gCGGCGgACUCGCG--GGC-GUCGGg -3'
miRNA:   3'- gaGCCGCgUGAGCGUuuUCGcCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.