miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9205 5' -55.1 NC_002512.2 + 18610 1.1 0.005059
Target:  5'- aCUCGGCGCACUCGCAAAAGCGGUCGAa -3'
miRNA:   3'- -GAGCCGCGUGAGCGUUUUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 108573 0.77 0.488824
Target:  5'- -cCGGUGCugUCGCugugguuccgggcgGAGAGCGGUCGc -3'
miRNA:   3'- gaGCCGCGugAGCG--------------UUUUCGCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 145155 0.76 0.529638
Target:  5'- -aCGGCGCugUCGCGcGAGCGGaUCc- -3'
miRNA:   3'- gaGCCGCGugAGCGUuUUCGCC-AGcu -5'
9205 5' -55.1 NC_002512.2 + 160854 0.75 0.588473
Target:  5'- gCUgGGCGCAgUCGCAGAggGGCGGacacgUCGGc -3'
miRNA:   3'- -GAgCCGCGUgAGCGUUU--UCGCC-----AGCU- -5'
9205 5' -55.1 NC_002512.2 + 153732 0.75 0.588473
Target:  5'- -aCGGCGCugUcCGUggGGGGGUGGUCGAa -3'
miRNA:   3'- gaGCCGCGugA-GCG--UUUUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 108324 0.75 0.608391
Target:  5'- -gCGGCGCGCg-GCG--GGCGGUCGGc -3'
miRNA:   3'- gaGCCGCGUGagCGUuuUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 15961 0.74 0.628376
Target:  5'- -gCGGCG-ACUCGCAcucGccGCGGUCGAu -3'
miRNA:   3'- gaGCCGCgUGAGCGU---UuuCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 155258 0.73 0.698008
Target:  5'- -gCGGCGUcgacgGCUCGCGggagccGAGGCGGcUCGAg -3'
miRNA:   3'- gaGCCGCG-----UGAGCGU------UUUCGCC-AGCU- -5'
9205 5' -55.1 NC_002512.2 + 168980 0.73 0.707811
Target:  5'- gUCGGUGUccGCUCGaccGAGCGGUCGc -3'
miRNA:   3'- gAGCCGCG--UGAGCguuUUCGCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 194991 0.73 0.717551
Target:  5'- uCUCGGCGCAagaggGCGAcGGCGGUCc- -3'
miRNA:   3'- -GAGCCGCGUgag--CGUUuUCGCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 20482 0.72 0.73586
Target:  5'- -aUGGUGCACUgguagCGCAGGAGCuggccgaGGUCGAa -3'
miRNA:   3'- gaGCCGCGUGA-----GCGUUUUCG-------CCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 102474 0.72 0.736815
Target:  5'- --gGGCGCGCccgUCGCGGuGGCGGUCc- -3'
miRNA:   3'- gagCCGCGUG---AGCGUUuUCGCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 83937 0.72 0.746321
Target:  5'- -cCGGCGCAUgUCGCGc-AGCaGGUCGAa -3'
miRNA:   3'- gaGCCGCGUG-AGCGUuuUCG-CCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 123668 0.72 0.755731
Target:  5'- -gCGGcCGgGCUCGgGGAAGCGGUCc- -3'
miRNA:   3'- gaGCC-GCgUGAGCgUUUUCGCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 37293 0.72 0.755731
Target:  5'- -gCGGCGCGC-CGCAGcAGCGGgaCGGu -3'
miRNA:   3'- gaGCCGCGUGaGCGUUuUCGCCa-GCU- -5'
9205 5' -55.1 NC_002512.2 + 71968 0.72 0.772402
Target:  5'- --aGGUGUACUCGCAGuuggggaacauGCGGUCGu -3'
miRNA:   3'- gagCCGCGUGAGCGUUuu---------CGCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 107719 0.72 0.774231
Target:  5'- -gUGGCGCAggUCGCAGAGGUGGgugCGGu -3'
miRNA:   3'- gaGCCGCGUg-AGCGUUUUCGCCa--GCU- -5'
9205 5' -55.1 NC_002512.2 + 214312 0.72 0.783303
Target:  5'- uUCGGCGUGC-CGCAcGAGCaGGcCGAc -3'
miRNA:   3'- gAGCCGCGUGaGCGUuUUCG-CCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 164451 0.72 0.783303
Target:  5'- gCUCGGCGCcCUCGgCGGGGGCGa-CGAc -3'
miRNA:   3'- -GAGCCGCGuGAGC-GUUUUCGCcaGCU- -5'
9205 5' -55.1 NC_002512.2 + 196099 0.72 0.783303
Target:  5'- cCUCuGCuGCAUgucgaugaaGCAGAGGCGGUCGAu -3'
miRNA:   3'- -GAGcCG-CGUGag-------CGUUUUCGCCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.