miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9205 5' -55.1 NC_002512.2 + 217890 0.66 0.976494
Target:  5'- aUCGGCGgcCGCgUCGuCGAGcGGCGGUaCGAg -3'
miRNA:   3'- gAGCCGC--GUG-AGC-GUUU-UCGCCA-GCU- -5'
9205 5' -55.1 NC_002512.2 + 198029 0.66 0.968468
Target:  5'- --gGGaCGCGCgCGCGAGGggacGCGGUCGu -3'
miRNA:   3'- gagCC-GCGUGaGCGUUUU----CGCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 193558 0.66 0.968468
Target:  5'- --nGGCGCugUgGUggGAGgGGUgGGg -3'
miRNA:   3'- gagCCGCGugAgCGuuUUCgCCAgCU- -5'
9205 5' -55.1 NC_002512.2 + 219708 0.66 0.968468
Target:  5'- gUCGGCGCuCggggCGCGAGAGgCGGcCc- -3'
miRNA:   3'- gAGCCGCGuGa---GCGUUUUC-GCCaGcu -5'
9205 5' -55.1 NC_002512.2 + 217831 0.66 0.962139
Target:  5'- -aCGGCGgGCgguUCgGCAGAGGCGGcagCGGu -3'
miRNA:   3'- gaGCCGCgUG---AG-CGUUUUCGCCa--GCU- -5'
9205 5' -55.1 NC_002512.2 + 193881 0.66 0.962139
Target:  5'- -gCGGUGgACgaCGCGGGAGCgGGUCGc -3'
miRNA:   3'- gaGCCGCgUGa-GCGUUUUCG-CCAGCu -5'
9205 5' -55.1 NC_002512.2 + 99085 0.66 0.962139
Target:  5'- cCUCGGC-CAC-CGCGugcuGCGcGUCGGc -3'
miRNA:   3'- -GAGCCGcGUGaGCGUuuu-CGC-CAGCU- -5'
9205 5' -55.1 NC_002512.2 + 115457 0.66 0.962139
Target:  5'- gCUCGuuccGCGgACcgCGUggGAGCcGGUCGAg -3'
miRNA:   3'- -GAGC----CGCgUGa-GCGuuUUCG-CCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 38881 0.66 0.962139
Target:  5'- cCUCGGUccGCGCggGCAGuacGCGGUCu- -3'
miRNA:   3'- -GAGCCG--CGUGagCGUUuu-CGCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 113058 0.66 0.971333
Target:  5'- gUCGGagcCGCACgaggGCc-AGGCGGUCGAc -3'
miRNA:   3'- gAGCC---GCGUGag--CGuuUUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 148816 0.66 0.971333
Target:  5'- uCUCGGa--GCUCGUccuGGGGGCGGUCc- -3'
miRNA:   3'- -GAGCCgcgUGAGCG---UUUUCGCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 156579 0.66 0.971333
Target:  5'- gCUCGGUGCGCuUCGUc--AGCGGcCu- -3'
miRNA:   3'- -GAGCCGCGUG-AGCGuuuUCGCCaGcu -5'
9205 5' -55.1 NC_002512.2 + 158979 0.66 0.976494
Target:  5'- uUCGGCGgcCACggcgggGCGGAGGCGG-CGGc -3'
miRNA:   3'- gAGCCGC--GUGag----CGUUUUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 113653 0.66 0.976253
Target:  5'- gUUGGCGCggccgGC-CGCGAGGGUgcgcgcgGGUCGGa -3'
miRNA:   3'- gAGCCGCG-----UGaGCGUUUUCG-------CCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 94506 0.66 0.976253
Target:  5'- gUCgGGCGCGuCUucgaaccCGCccaggacGAAGCGGUCGAc -3'
miRNA:   3'- gAG-CCGCGU-GA-------GCGu------UUUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 146088 0.66 0.974006
Target:  5'- -cCGGCGCGCccgaCGCGGuccucGGCGG-CGGc -3'
miRNA:   3'- gaGCCGCGUGa---GCGUUu----UCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 112939 0.66 0.974006
Target:  5'- -gUGGCGCGCgagccCGCGGAccgGGUCGAa -3'
miRNA:   3'- gaGCCGCGUGa----GCGUUUucgCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 153391 0.66 0.974006
Target:  5'- -cCGGaGCgACguggagCGCGGcGGCGGUCGAg -3'
miRNA:   3'- gaGCCgCG-UGa-----GCGUUuUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 192643 0.66 0.971333
Target:  5'- -aCGGCaacgGCUCGCGGGGGCGGcugccccacUCGGa -3'
miRNA:   3'- gaGCCGcg--UGAGCGUUUUCGCC---------AGCU- -5'
9205 5' -55.1 NC_002512.2 + 219811 0.66 0.971333
Target:  5'- --gGGaCGCGCggggCGCGAcAGGgGGUCGGu -3'
miRNA:   3'- gagCC-GCGUGa---GCGUU-UUCgCCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.