miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9205 5' -55.1 NC_002512.2 + 3601 0.68 0.933232
Target:  5'- uCUCGGgGaCAggCGCAGAGcccGCGGUCGu -3'
miRNA:   3'- -GAGCCgC-GUgaGCGUUUU---CGCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 4004 0.66 0.974006
Target:  5'- -gCGGgGgGCgUCGCAGGAGuCGcGUCGGa -3'
miRNA:   3'- gaGCCgCgUG-AGCGUUUUC-GC-CAGCU- -5'
9205 5' -55.1 NC_002512.2 + 6415 0.68 0.917467
Target:  5'- -gCGGCgGCGCUgGgGAAGGCGGcCGu -3'
miRNA:   3'- gaGCCG-CGUGAgCgUUUUCGCCaGCu -5'
9205 5' -55.1 NC_002512.2 + 7319 0.68 0.928205
Target:  5'- -aCGGCGgGC-CGCGGcGGGaCGGUCGGg -3'
miRNA:   3'- gaGCCGCgUGaGCGUU-UUC-GCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 12602 0.66 0.971333
Target:  5'- -cCGGCGCGCggucCGCAu-GGCGGa--- -3'
miRNA:   3'- gaGCCGCGUGa---GCGUuuUCGCCagcu -5'
9205 5' -55.1 NC_002512.2 + 15483 0.72 0.783303
Target:  5'- -gCGGCGCGCUCcgGCccGAAGUGGcCGAa -3'
miRNA:   3'- gaGCCGCGUGAG--CGu-UUUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 15961 0.74 0.628376
Target:  5'- -gCGGCG-ACUCGCAcucGccGCGGUCGAu -3'
miRNA:   3'- gaGCCGCgUGAGCGU---UuuCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 17795 0.68 0.911757
Target:  5'- aCUCGGCgagcacGCGCUCGuCGuacAGGCGG-CGGa -3'
miRNA:   3'- -GAGCCG------CGUGAGC-GUu--UUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 18610 1.1 0.005059
Target:  5'- aCUCGGCGCACUCGCAAAAGCGGUCGAa -3'
miRNA:   3'- -GAGCCGCGUGAGCGUUUUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 19257 0.67 0.96008
Target:  5'- --aGGCGUACUCGCAGuugcccagccggaccAGGUGaUCGGa -3'
miRNA:   3'- gagCCGCGUGAGCGUU---------------UUCGCcAGCU- -5'
9205 5' -55.1 NC_002512.2 + 20482 0.72 0.73586
Target:  5'- -aUGGUGCACUgguagCGCAGGAGCuggccgaGGUCGAa -3'
miRNA:   3'- gaGCCGCGUGA-----GCGUUUUCG-------CCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 21060 0.66 0.965405
Target:  5'- -gCGGCGCGUgagggCGCAcgGGCGG-CGGu -3'
miRNA:   3'- gaGCCGCGUGa----GCGUuuUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 25873 0.7 0.834732
Target:  5'- gUCGGCccGCACgaaGCcgaAGAGGCGGUCGu -3'
miRNA:   3'- gAGCCG--CGUGag-CG---UUUUCGCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 31795 0.66 0.965405
Target:  5'- aCUCGGCG-ACggggagaCGcCGGGGcGCGGUCGAg -3'
miRNA:   3'- -GAGCCGCgUGa------GC-GUUUU-CGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 36462 0.66 0.971333
Target:  5'- -gCGGuCGCGCUCGUAGucGUcGUCGu -3'
miRNA:   3'- gaGCC-GCGUGAGCGUUuuCGcCAGCu -5'
9205 5' -55.1 NC_002512.2 + 36869 0.67 0.950671
Target:  5'- --aGGCGUACUUGCAggugggcAGGGCGG-CGc -3'
miRNA:   3'- gagCCGCGUGAGCGU-------UUUCGCCaGCu -5'
9205 5' -55.1 NC_002512.2 + 37293 0.72 0.755731
Target:  5'- -gCGGCGCGC-CGCAGcAGCGGgaCGGu -3'
miRNA:   3'- gaGCCGCGUGaGCGUUuUCGCCa-GCU- -5'
9205 5' -55.1 NC_002512.2 + 38881 0.66 0.962139
Target:  5'- cCUCGGUccGCGCggGCAGuacGCGGUCu- -3'
miRNA:   3'- -GAGCCG--CGUGagCGUUuu-CGCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 41255 0.66 0.976494
Target:  5'- -cCGGCGCcCUUGCGGcccGAGCGcUCGu -3'
miRNA:   3'- gaGCCGCGuGAGCGUU---UUCGCcAGCu -5'
9205 5' -55.1 NC_002512.2 + 45273 0.68 0.917467
Target:  5'- -gCGGgGCGCUCGCGcucgucucGCgGGUCGGa -3'
miRNA:   3'- gaGCCgCGUGAGCGUuuu-----CG-CCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.