miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9205 5' -55.1 NC_002512.2 + 53230 0.71 0.809709
Target:  5'- --aGGCGCGCUgGCGGGAGCuGGU-GAu -3'
miRNA:   3'- gagCCGCGUGAgCGUUUUCG-CCAgCU- -5'
9205 5' -55.1 NC_002512.2 + 54233 0.69 0.87917
Target:  5'- uUCGaGaCGCACUCGCAcguccgcagcggcAGGGCGG-CGGc -3'
miRNA:   3'- gAGC-C-GCGUGAGCGU-------------UUUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 55529 0.66 0.971333
Target:  5'- uCUCGGC-CAUcCGCAucccGGCGGaCGAg -3'
miRNA:   3'- -GAGCCGcGUGaGCGUuu--UCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 57080 0.68 0.917467
Target:  5'- --aGGCGCAC-CGCAAgcuccgcugaccGAGCGGgaCGAg -3'
miRNA:   3'- gagCCGCGUGaGCGUU------------UUCGCCa-GCU- -5'
9205 5' -55.1 NC_002512.2 + 57185 0.68 0.92295
Target:  5'- --aGG-GCAcCUCGCGGcAGCGGUCGc -3'
miRNA:   3'- gagCCgCGU-GAGCGUUuUCGCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 57307 0.67 0.942603
Target:  5'- -cCGGUcucGUACUCGCGGgcGCGGagGAa -3'
miRNA:   3'- gaGCCG---CGUGAGCGUUuuCGCCagCU- -5'
9205 5' -55.1 NC_002512.2 + 60895 0.69 0.89966
Target:  5'- -cCGGCGCGCgacCGCu----CGGUCGAg -3'
miRNA:   3'- gaGCCGCGUGa--GCGuuuucGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 62297 0.67 0.946949
Target:  5'- -cCGG-GCG-UCGCAGAGGCGG-CGGa -3'
miRNA:   3'- gaGCCgCGUgAGCGUUUUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 62578 0.66 0.974006
Target:  5'- aCUCgaGGCGCACggggUCGCGGAAcaGGUCGc -3'
miRNA:   3'- -GAG--CCGCGUG----AGCGUUUUcgCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 62710 0.67 0.942603
Target:  5'- uCUUGaCGCGCagCGCGuc-GCGGUCGAc -3'
miRNA:   3'- -GAGCcGCGUGa-GCGUuuuCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 67741 0.67 0.951073
Target:  5'- gUCGGCGUGCcggccUCGCGAGccGgGGUCGu -3'
miRNA:   3'- gAGCCGCGUG-----AGCGUUUu-CgCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 69906 0.66 0.965405
Target:  5'- cCUCGuaGCACUgGU---AGCaGGUCGAg -3'
miRNA:   3'- -GAGCcgCGUGAgCGuuuUCG-CCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 71968 0.72 0.772402
Target:  5'- --aGGUGUACUCGCAGuuggggaacauGCGGUCGu -3'
miRNA:   3'- gagCCGCGUGAGCGUUuu---------CGCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 74413 0.66 0.968468
Target:  5'- -aCGGUGCcgacgaACUCGCGGucGaCGGUCa- -3'
miRNA:   3'- gaGCCGCG------UGAGCGUUuuC-GCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 78550 0.66 0.970776
Target:  5'- -aUGGCGCcggccggGC-CGCGAGGGCGGauggaaaUCGAa -3'
miRNA:   3'- gaGCCGCG-------UGaGCGUUUUCGCC-------AGCU- -5'
9205 5' -55.1 NC_002512.2 + 79945 0.71 0.809709
Target:  5'- -gCGGCGCggggguccgccuGC-CGuCGGAAGCGGUCGGc -3'
miRNA:   3'- gaGCCGCG------------UGaGC-GUUUUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 80579 0.69 0.886678
Target:  5'- -gCGGCGaGCcCGCGc-GGCGGUCGAc -3'
miRNA:   3'- gaGCCGCgUGaGCGUuuUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 80855 0.66 0.976494
Target:  5'- cCUCGGgaCGCgggGCUCGguGucGGGCGGUCc- -3'
miRNA:   3'- -GAGCC--GCG---UGAGCguU--UUCGCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 81350 0.66 0.974006
Target:  5'- gUgGGCGCcuccCUCGCGgccGGGGCGGgCGGc -3'
miRNA:   3'- gAgCCGCGu---GAGCGU---UUUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 81896 0.66 0.971333
Target:  5'- -gUGGUGUACUCGCGGA---GGUCGu -3'
miRNA:   3'- gaGCCGCGUGAGCGUUUucgCCAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.