miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9205 5' -55.1 NC_002512.2 + 18610 1.1 0.005059
Target:  5'- aCUCGGCGCACUCGCAAAAGCGGUCGAa -3'
miRNA:   3'- -GAGCCGCGUGAGCGUUUUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 91920 0.68 0.928205
Target:  5'- -gCGGCGCGC-CGUc--GGCGGcCGAc -3'
miRNA:   3'- gaGCCGCGUGaGCGuuuUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 7319 0.68 0.928205
Target:  5'- -aCGGCGgGC-CGCGGcGGGaCGGUCGGg -3'
miRNA:   3'- gaGCCGCgUGaGCGUU-UUC-GCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 137795 0.69 0.89966
Target:  5'- gCUCGGCGgGCcgCGCGuccGGCGGcCGu -3'
miRNA:   3'- -GAGCCGCgUGa-GCGUuu-UCGCCaGCu -5'
9205 5' -55.1 NC_002512.2 + 79945 0.71 0.809709
Target:  5'- -gCGGCGCggggguccgccuGC-CGuCGGAAGCGGUCGGc -3'
miRNA:   3'- gaGCCGCG------------UGaGC-GUUUUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 57307 0.67 0.942603
Target:  5'- -cCGGUcucGUACUCGCGGgcGCGGagGAa -3'
miRNA:   3'- gaGCCG---CGUGAGCGUUuuCGCCagCU- -5'
9205 5' -55.1 NC_002512.2 + 85567 0.68 0.933232
Target:  5'- --aGGCGCGggaGCGGGAGCGGcCGGg -3'
miRNA:   3'- gagCCGCGUgagCGUUUUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 37293 0.72 0.755731
Target:  5'- -gCGGCGCGC-CGCAGcAGCGGgaCGGu -3'
miRNA:   3'- gaGCCGCGUGaGCGUUuUCGCCa-GCU- -5'
9205 5' -55.1 NC_002512.2 + 45273 0.68 0.917467
Target:  5'- -gCGGgGCGCUCGCGcucgucucGCgGGUCGGa -3'
miRNA:   3'- gaGCCgCGUGAGCGUuuu-----CG-CCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 101122 0.69 0.90582
Target:  5'- -gCGGCGUgcGCUCGCGc-AGCGcGUCGu -3'
miRNA:   3'- gaGCCGCG--UGAGCGUuuUCGC-CAGCu -5'
9205 5' -55.1 NC_002512.2 + 83937 0.72 0.746321
Target:  5'- -cCGGCGCAUgUCGCGc-AGCaGGUCGAa -3'
miRNA:   3'- gaGCCGCGUG-AGCGUuuUCG-CCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 20482 0.72 0.73586
Target:  5'- -aUGGUGCACUgguagCGCAGGAGCuggccgaGGUCGAa -3'
miRNA:   3'- gaGCCGCGUGA-----GCGUUUUCG-------CCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 62297 0.67 0.946949
Target:  5'- -cCGG-GCG-UCGCAGAGGCGG-CGGa -3'
miRNA:   3'- gaGCCgCGUgAGCGUUUUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 62710 0.67 0.942603
Target:  5'- uCUUGaCGCGCagCGCGuc-GCGGUCGAc -3'
miRNA:   3'- -GAGCcGCGUGa-GCGUuuuCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 57185 0.68 0.92295
Target:  5'- --aGG-GCAcCUCGCGGcAGCGGUCGc -3'
miRNA:   3'- gagCCgCGU-GAGCGUUuUCGCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 54233 0.69 0.87917
Target:  5'- uUCGaGaCGCACUCGCAcguccgcagcggcAGGGCGG-CGGc -3'
miRNA:   3'- gAGC-C-GCGUGAGCGU-------------UUUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 82969 0.71 0.818214
Target:  5'- -gCGGCGCACggCGCGGAAGaC-GUCGGc -3'
miRNA:   3'- gaGCCGCGUGa-GCGUUUUC-GcCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 155258 0.73 0.698008
Target:  5'- -gCGGCGUcgacgGCUCGCGggagccGAGGCGGcUCGAg -3'
miRNA:   3'- gaGCCGCG-----UGAGCGU------UUUCGCC-AGCU- -5'
9205 5' -55.1 NC_002512.2 + 60895 0.69 0.89966
Target:  5'- -cCGGCGCGCgacCGCu----CGGUCGAg -3'
miRNA:   3'- gaGCCGCGUGa--GCGuuuucGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 6415 0.68 0.917467
Target:  5'- -gCGGCgGCGCUgGgGAAGGCGGcCGu -3'
miRNA:   3'- gaGCCG-CGUGAgCgUUUUCGCCaGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.