miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9205 5' -55.1 NC_002512.2 + 101122 0.69 0.90582
Target:  5'- -gCGGCGUgcGCUCGCGc-AGCGcGUCGu -3'
miRNA:   3'- gaGCCGCG--UGAGCGUuuUCGC-CAGCu -5'
9205 5' -55.1 NC_002512.2 + 122032 0.69 0.893278
Target:  5'- aUCGGCGCucgCGCAcgcccGGGGCGGcgUCGGc -3'
miRNA:   3'- gAGCCGCGugaGCGU-----UUUCGCC--AGCU- -5'
9205 5' -55.1 NC_002512.2 + 15483 0.72 0.783303
Target:  5'- -gCGGCGCGCUCcgGCccGAAGUGGcCGAa -3'
miRNA:   3'- gaGCCGCGUGAG--CGu-UUUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 15961 0.74 0.628376
Target:  5'- -gCGGCG-ACUCGCAcucGccGCGGUCGAu -3'
miRNA:   3'- gaGCCGCgUGAGCGU---UuuCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 137214 0.68 0.933232
Target:  5'- -gCGGCGCGCccggCGCG--GGCGGcCGu -3'
miRNA:   3'- gaGCCGCGUGa---GCGUuuUCGCCaGCu -5'
9205 5' -55.1 NC_002512.2 + 138308 0.68 0.917467
Target:  5'- -cCGcGCGCGCUCGUagcggauccgcGAGAGCGG-CGu -3'
miRNA:   3'- gaGC-CGCGUGAGCG-----------UUUUCGCCaGCu -5'
9205 5' -55.1 NC_002512.2 + 80579 0.69 0.886678
Target:  5'- -gCGGCGaGCcCGCGc-GGCGGUCGAc -3'
miRNA:   3'- gaGCCGCgUGaGCGUuuUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 108324 0.75 0.608391
Target:  5'- -gCGGCGCGCg-GCG--GGCGGUCGGc -3'
miRNA:   3'- gaGCCGCGUGagCGUuuUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 57080 0.68 0.917467
Target:  5'- --aGGCGCAC-CGCAAgcuccgcugaccGAGCGGgaCGAg -3'
miRNA:   3'- gagCCGCGUGaGCGUU------------UUCGCCa-GCU- -5'
9205 5' -55.1 NC_002512.2 + 153732 0.75 0.588473
Target:  5'- -aCGGCGCugUcCGUggGGGGGUGGUCGAa -3'
miRNA:   3'- gaGCCGCGugA-GCG--UUUUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 92015 0.69 0.893278
Target:  5'- -gCGGCGgACUCGCG--GGC-GUCGGg -3'
miRNA:   3'- gaGCCGCgUGAGCGUuuUCGcCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 17795 0.68 0.911757
Target:  5'- aCUCGGCgagcacGCGCUCGuCGuacAGGCGG-CGGa -3'
miRNA:   3'- -GAGCCG------CGUGAGC-GUu--UUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 25873 0.7 0.834732
Target:  5'- gUCGGCccGCACgaaGCcgaAGAGGCGGUCGu -3'
miRNA:   3'- gAGCCG--CGUGag-CG---UUUUCGCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 53230 0.71 0.809709
Target:  5'- --aGGCGCGCUgGCGGGAGCuGGU-GAu -3'
miRNA:   3'- gagCCGCGUGAgCGUUUUCG-CCAgCU- -5'
9205 5' -55.1 NC_002512.2 + 123668 0.72 0.755731
Target:  5'- -gCGGcCGgGCUCGgGGAAGCGGUCc- -3'
miRNA:   3'- gaGCC-GCgUGAGCgUUUUCGCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 155258 0.73 0.698008
Target:  5'- -gCGGCGUcgacgGCUCGCGggagccGAGGCGGcUCGAg -3'
miRNA:   3'- gaGCCGCG-----UGAGCGU------UUUCGCC-AGCU- -5'
9205 5' -55.1 NC_002512.2 + 86578 0.67 0.946525
Target:  5'- cCUUGGUccguccuuCGCUCGCcgcgauggucgggGGGAGCGGUCGGu -3'
miRNA:   3'- -GAGCCGc-------GUGAGCG-------------UUUUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 89767 0.67 0.942156
Target:  5'- gUCGGCGCGCggGCAucugacaucggggAGAGCGucGUCGu -3'
miRNA:   3'- gAGCCGCGUGagCGU-------------UUUCGC--CAGCu -5'
9205 5' -55.1 NC_002512.2 + 3601 0.68 0.933232
Target:  5'- uCUCGGgGaCAggCGCAGAGcccGCGGUCGu -3'
miRNA:   3'- -GAGCCgC-GUgaGCGUUUU---CGCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 57185 0.68 0.92295
Target:  5'- --aGG-GCAcCUCGCGGcAGCGGUCGc -3'
miRNA:   3'- gagCCgCGU-GAGCGUUuUCGCCAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.