miRNA display CGI


Results 41 - 60 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9205 5' -55.1 NC_002512.2 + 147533 0.69 0.886006
Target:  5'- -cCGGCGCGaggCGCGAAacgcuuaAGCGGUgGGu -3'
miRNA:   3'- gaGCCGCGUga-GCGUUU-------UCGCCAgCU- -5'
9205 5' -55.1 NC_002512.2 + 146088 0.66 0.974006
Target:  5'- -cCGGCGCGCccgaCGCGGuccucGGCGG-CGGc -3'
miRNA:   3'- gaGCCGCGUGa---GCGUUu----UCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 145155 0.76 0.529638
Target:  5'- -aCGGCGCugUCGCGcGAGCGGaUCc- -3'
miRNA:   3'- gaGCCGCGugAGCGUuUUCGCC-AGcu -5'
9205 5' -55.1 NC_002512.2 + 139788 0.66 0.965088
Target:  5'- -cCGGCGCACccUCcaggccgGCGGGGGCcucGGUCGGg -3'
miRNA:   3'- gaGCCGCGUG--AG-------CGUUUUCG---CCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 138673 0.67 0.958305
Target:  5'- -aCGGUGgACUCGCuGAacgugccccggguGGCGGUCu- -3'
miRNA:   3'- gaGCCGCgUGAGCGuUU-------------UCGCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 138308 0.68 0.917467
Target:  5'- -cCGcGCGCGCUCGUagcggauccgcGAGAGCGG-CGu -3'
miRNA:   3'- gaGC-CGCGUGAGCG-----------UUUUCGCCaGCu -5'
9205 5' -55.1 NC_002512.2 + 137795 0.69 0.89966
Target:  5'- gCUCGGCGgGCcgCGCGuccGGCGGcCGu -3'
miRNA:   3'- -GAGCCGCgUGa-GCGUuu-UCGCCaGCu -5'
9205 5' -55.1 NC_002512.2 + 137214 0.68 0.933232
Target:  5'- -gCGGCGCGCccggCGCG--GGCGGcCGu -3'
miRNA:   3'- gaGCCGCGUGa---GCGUuuUCGCCaGCu -5'
9205 5' -55.1 NC_002512.2 + 136082 0.69 0.886678
Target:  5'- -gCGGCGUuccugcugcuGCUCGCGcuGGCGG-CGGc -3'
miRNA:   3'- gaGCCGCG----------UGAGCGUuuUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 134326 0.66 0.965405
Target:  5'- -cCGGCGCcgacggACUCGCc---GCGGcCGAg -3'
miRNA:   3'- gaGCCGCG------UGAGCGuuuuCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 133374 0.67 0.951073
Target:  5'- -cCGGCGCgGCUCcCuccGGCGGUCGc -3'
miRNA:   3'- gaGCCGCG-UGAGcGuuuUCGCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 131213 0.7 0.865606
Target:  5'- -gCGGCcagGCGCUCGaCGuc-GCGGUCGGa -3'
miRNA:   3'- gaGCCG---CGUGAGC-GUuuuCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 130249 0.67 0.950671
Target:  5'- -cCGGCGUGCUUGguGAggaucagGGCGGcCGGc -3'
miRNA:   3'- gaGCCGCGUGAGCguUU-------UCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 126835 0.68 0.92295
Target:  5'- gUCGuCGCGCUCGUc---GCGGUCGu -3'
miRNA:   3'- gAGCcGCGUGAGCGuuuuCGCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 126765 0.7 0.858174
Target:  5'- cCUCGGgGCGCg-GCGGcGGCGG-CGAc -3'
miRNA:   3'- -GAGCCgCGUGagCGUUuUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 124380 0.67 0.946949
Target:  5'- -aCGGCGUcCUgCGCGAGAGgcUGGUCGu -3'
miRNA:   3'- gaGCCGCGuGA-GCGUUUUC--GCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 123827 0.67 0.958664
Target:  5'- --aGGCGCugUCGCAcGAucugcgcccGCGG-CGAc -3'
miRNA:   3'- gagCCGCGugAGCGUuUU---------CGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 123668 0.72 0.755731
Target:  5'- -gCGGcCGgGCUCGgGGAAGCGGUCc- -3'
miRNA:   3'- gaGCC-GCgUGAGCgUUUUCGCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 122032 0.69 0.893278
Target:  5'- aUCGGCGCucgCGCAcgcccGGGGCGGcgUCGGc -3'
miRNA:   3'- gAGCCGCGugaGCGU-----UUUCGCC--AGCU- -5'
9205 5' -55.1 NC_002512.2 + 120776 0.66 0.962139
Target:  5'- aCUCGGCgGCcgUCgGCGGGGGCGG-CGGg -3'
miRNA:   3'- -GAGCCG-CGugAG-CGUUUUCGCCaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.