miRNA display CGI


Results 41 - 60 of 140 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9205 5' -55.1 NC_002512.2 + 57307 0.67 0.942603
Target:  5'- -cCGGUcucGUACUCGCGGgcGCGGagGAa -3'
miRNA:   3'- gaGCCG---CGUGAGCGUUuuCGCCagCU- -5'
9205 5' -55.1 NC_002512.2 + 137795 0.69 0.89966
Target:  5'- gCUCGGCGgGCcgCGCGuccGGCGGcCGu -3'
miRNA:   3'- -GAGCCGCgUGa-GCGUuu-UCGCCaGCu -5'
9205 5' -55.1 NC_002512.2 + 20482 0.72 0.73586
Target:  5'- -aUGGUGCACUgguagCGCAGGAGCuggccgaGGUCGAa -3'
miRNA:   3'- gaGCCGCGUGA-----GCGUUUUCG-------CCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 89767 0.67 0.942156
Target:  5'- gUCGGCGCGCggGCAucugacaucggggAGAGCGucGUCGu -3'
miRNA:   3'- gAGCCGCGUGagCGU-------------UUUCGC--CAGCu -5'
9205 5' -55.1 NC_002512.2 + 155258 0.73 0.698008
Target:  5'- -gCGGCGUcgacgGCUCGCGggagccGAGGCGGcUCGAg -3'
miRNA:   3'- gaGCCGCG-----UGAGCGU------UUUCGCC-AGCU- -5'
9205 5' -55.1 NC_002512.2 + 21060 0.66 0.965405
Target:  5'- -gCGGCGCGUgagggCGCAcgGGCGG-CGGu -3'
miRNA:   3'- gaGCCGCGUGa----GCGUuuUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 123668 0.72 0.755731
Target:  5'- -gCGGcCGgGCUCGgGGAAGCGGUCc- -3'
miRNA:   3'- gaGCC-GCgUGAGCgUUUUCGCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 120776 0.66 0.962139
Target:  5'- aCUCGGCgGCcgUCgGCGGGGGCGG-CGGg -3'
miRNA:   3'- -GAGCCG-CGugAG-CGUUUUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 99085 0.66 0.962139
Target:  5'- cCUCGGC-CAC-CGCGugcuGCGcGUCGGc -3'
miRNA:   3'- -GAGCCGcGUGaGCGUuuu-CGC-CAGCU- -5'
9205 5' -55.1 NC_002512.2 + 101976 0.67 0.958305
Target:  5'- -cCGGCGgGCUCGUGGccgauccGA-CGGUCGAg -3'
miRNA:   3'- gaGCCGCgUGAGCGUU-------UUcGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 106773 0.67 0.954977
Target:  5'- uCUCGGCccgcgGCACUgGUcgGGGUcggGGUCGAc -3'
miRNA:   3'- -GAGCCG-----CGUGAgCGuuUUCG---CCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 36869 0.67 0.950671
Target:  5'- --aGGCGUACUUGCAggugggcAGGGCGG-CGc -3'
miRNA:   3'- gagCCGCGUGAGCGU-------UUUCGCCaGCu -5'
9205 5' -55.1 NC_002512.2 + 86578 0.67 0.946525
Target:  5'- cCUUGGUccguccuuCGCUCGCcgcgauggucgggGGGAGCGGUCGGu -3'
miRNA:   3'- -GAGCCGc-------GUGAGCG-------------UUUUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 85567 0.68 0.933232
Target:  5'- --aGGCGCGggaGCGGGAGCGGcCGGg -3'
miRNA:   3'- gagCCGCGUgagCGUUUUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 7319 0.68 0.928205
Target:  5'- -aCGGCGgGC-CGCGGcGGGaCGGUCGGg -3'
miRNA:   3'- gaGCCGCgUGaGCGUU-UUC-GCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 6415 0.68 0.917467
Target:  5'- -gCGGCgGCGCUgGgGAAGGCGGcCGu -3'
miRNA:   3'- gaGCCG-CGUGAgCgUUUUCGCCaGCu -5'
9205 5' -55.1 NC_002512.2 + 101122 0.69 0.90582
Target:  5'- -gCGGCGUgcGCUCGCGc-AGCGcGUCGu -3'
miRNA:   3'- gaGCCGCG--UGAGCGUuuUCGC-CAGCu -5'
9205 5' -55.1 NC_002512.2 + 80579 0.69 0.886678
Target:  5'- -gCGGCGaGCcCGCGc-GGCGGUCGAc -3'
miRNA:   3'- gaGCCGCgUGaGCGUuuUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 25873 0.7 0.834732
Target:  5'- gUCGGCccGCACgaaGCcgaAGAGGCGGUCGu -3'
miRNA:   3'- gAGCCG--CGUGag-CG---UUUUCGCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 15483 0.72 0.783303
Target:  5'- -gCGGCGCGCUCcgGCccGAAGUGGcCGAa -3'
miRNA:   3'- gaGCCGCGUGAG--CGu-UUUCGCCaGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.