miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9211 5' -55.1 NC_002512.2 + 7758 0.71 0.8002
Target:  5'- aGCCGggGCgguagucgGC-CGCGGAGAUGGUGg -3'
miRNA:   3'- gCGGCagCGa-------UGcGUGCCUCUACUAC- -5'
9211 5' -55.1 NC_002512.2 + 10432 0.68 0.927374
Target:  5'- gCGUCGUCGCcgucGgGCACGGGGgcGcgGa -3'
miRNA:   3'- -GCGGCAGCGa---UgCGUGCCUCuaCuaC- -5'
9211 5' -55.1 NC_002512.2 + 18201 0.67 0.957995
Target:  5'- uGCCGcaucaCGUcGCGCACGGuccGGAUGAg- -3'
miRNA:   3'- gCGGCa----GCGaUGCGUGCC---UCUACUac -5'
9211 5' -55.1 NC_002512.2 + 21527 0.69 0.910878
Target:  5'- uCGUCGUCGaaACGCAccugcuccuCGGGGGUGAg- -3'
miRNA:   3'- -GCGGCAGCgaUGCGU---------GCCUCUACUac -5'
9211 5' -55.1 NC_002512.2 + 22297 0.69 0.892368
Target:  5'- cCGCCGUCGCagGC-CAgGGAGAgggGAg- -3'
miRNA:   3'- -GCGGCAGCGa-UGcGUgCCUCUa--CUac -5'
9211 5' -55.1 NC_002512.2 + 23460 1.08 0.00712
Target:  5'- gCGCCGUCGCUACGCACGGAGAUGAUGc -3'
miRNA:   3'- -GCGGCAGCGAUGCGUGCCUCUACUAC- -5'
9211 5' -55.1 NC_002512.2 + 25184 0.71 0.799328
Target:  5'- cCGCCGUCGCcgACGUcgcguccgccgcgACGGAGcgGGa- -3'
miRNA:   3'- -GCGGCAGCGa-UGCG-------------UGCCUCuaCUac -5'
9211 5' -55.1 NC_002512.2 + 26738 0.68 0.922101
Target:  5'- uCGCCGgcgcCGCUguACGcCACGGuGAUGGc- -3'
miRNA:   3'- -GCGGCa---GCGA--UGC-GUGCCuCUACUac -5'
9211 5' -55.1 NC_002512.2 + 31673 0.67 0.961497
Target:  5'- gGCCGUgGUgGCGgACGGGGAgGAg- -3'
miRNA:   3'- gCGGCAgCGaUGCgUGCCUCUaCUac -5'
9211 5' -55.1 NC_002512.2 + 33355 0.67 0.954281
Target:  5'- gGCuCGUCGUcACGCcucgUGGAGAacUGAUGg -3'
miRNA:   3'- gCG-GCAGCGaUGCGu---GCCUCU--ACUAC- -5'
9211 5' -55.1 NC_002512.2 + 33869 0.75 0.588281
Target:  5'- aGCCGgucccccccuUCGCguccGCGCACGGAGA-GGUGg -3'
miRNA:   3'- gCGGC----------AGCGa---UGCGUGCCUCUaCUAC- -5'
9211 5' -55.1 NC_002512.2 + 34390 0.66 0.97833
Target:  5'- gGCCG-CGUU-CG-ACGGuGAUGAUGa -3'
miRNA:   3'- gCGGCaGCGAuGCgUGCCuCUACUAC- -5'
9211 5' -55.1 NC_002512.2 + 34895 0.66 0.973477
Target:  5'- cCGCCGUCGCccucuUGCGCcGAGAgGAg- -3'
miRNA:   3'- -GCGGCAGCGau---GCGUGcCUCUaCUac -5'
9211 5' -55.1 NC_002512.2 + 36775 0.69 0.910878
Target:  5'- gGCCGgaCGCaGCucuccgGCGCGGAGAUGAa- -3'
miRNA:   3'- gCGGCa-GCGaUG------CGUGCCUCUACUac -5'
9211 5' -55.1 NC_002512.2 + 38068 0.66 0.970775
Target:  5'- gGCCGauUCGCaACGCACGGAucauuAUGGa- -3'
miRNA:   3'- gCGGC--AGCGaUGCGUGCCUc----UACUac -5'
9211 5' -55.1 NC_002512.2 + 47902 0.68 0.941833
Target:  5'- aCGCCGcCacCUACGUGCGGAuGGUGAc- -3'
miRNA:   3'- -GCGGCaGc-GAUGCGUGCCU-CUACUac -5'
9211 5' -55.1 NC_002512.2 + 50023 0.67 0.946204
Target:  5'- aCGUCGUCGUgacgguggGCGCgcacacGCGGGGGcUGGUGc -3'
miRNA:   3'- -GCGGCAGCGa-------UGCG------UGCCUCU-ACUAC- -5'
9211 5' -55.1 NC_002512.2 + 63446 0.66 0.975993
Target:  5'- gCGCCGUCGCccccggaggACG-GCGGGGAaGAg- -3'
miRNA:   3'- -GCGGCAGCGa--------UGCgUGCCUCUaCUac -5'
9211 5' -55.1 NC_002512.2 + 79980 0.67 0.954281
Target:  5'- gGCCGagGaggGCGCGCGGAGGUc--- -3'
miRNA:   3'- gCGGCagCga-UGCGUGCCUCUAcuac -5'
9211 5' -55.1 NC_002512.2 + 82224 0.67 0.954281
Target:  5'- cCGUCGUCGCgccccCGCGaGGAGG-GAUGc -3'
miRNA:   3'- -GCGGCAGCGau---GCGUgCCUCUaCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.