miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9211 5' -55.1 NC_002512.2 + 23460 1.08 0.00712
Target:  5'- gCGCCGUCGCUACGCACGGAGAUGAUGc -3'
miRNA:   3'- -GCGGCAGCGAUGCGUGCCUCUACUAC- -5'
9211 5' -55.1 NC_002512.2 + 10432 0.68 0.927374
Target:  5'- gCGUCGUCGCcgucGgGCACGGGGgcGcgGa -3'
miRNA:   3'- -GCGGCAGCGa---UgCGUGCCUCuaCuaC- -5'
9211 5' -55.1 NC_002512.2 + 225150 0.68 0.941833
Target:  5'- cCGCCGUCGacgACGCAugccCGGAGccGGg- -3'
miRNA:   3'- -GCGGCAGCga-UGCGU----GCCUCuaCUac -5'
9211 5' -55.1 NC_002512.2 + 63446 0.66 0.975993
Target:  5'- gCGCCGUCGCccccggaggACG-GCGGGGAaGAg- -3'
miRNA:   3'- -GCGGCAGCGa--------UGCgUGCCUCUaCUac -5'
9211 5' -55.1 NC_002512.2 + 139259 0.72 0.773439
Target:  5'- gCGCCGggUCGCgccgcccgGCGCGCGGGGgcGAa- -3'
miRNA:   3'- -GCGGC--AGCGa-------UGCGUGCCUCuaCUac -5'
9211 5' -55.1 NC_002512.2 + 25184 0.71 0.799328
Target:  5'- cCGCCGUCGCcgACGUcgcguccgccgcgACGGAGcgGGa- -3'
miRNA:   3'- -GCGGCAGCGa-UGCG-------------UGCCUCuaCUac -5'
9211 5' -55.1 NC_002512.2 + 134138 0.71 0.817334
Target:  5'- gGCCGUCGCgGCGCgcgucccggccgGCGGGGAcGggGa -3'
miRNA:   3'- gCGGCAGCGaUGCG------------UGCCUCUaCuaC- -5'
9211 5' -55.1 NC_002512.2 + 97153 0.7 0.84182
Target:  5'- aCGCCG-CGCUGCGCcuGCGGcAGcgGGc- -3'
miRNA:   3'- -GCGGCaGCGAUGCG--UGCC-UCuaCUac -5'
9211 5' -55.1 NC_002512.2 + 22297 0.69 0.892368
Target:  5'- cCGCCGUCGCagGC-CAgGGAGAgggGAg- -3'
miRNA:   3'- -GCGGCAGCGa-UGcGUgCCUCUa--CUac -5'
9211 5' -55.1 NC_002512.2 + 110186 0.68 0.922101
Target:  5'- gGCCGgcCGCUucucGCGCGCaGGGGUGcgGg -3'
miRNA:   3'- gCGGCa-GCGA----UGCGUGcCUCUACuaC- -5'
9211 5' -55.1 NC_002512.2 + 36775 0.69 0.910878
Target:  5'- gGCCGgaCGCaGCucuccgGCGCGGAGAUGAa- -3'
miRNA:   3'- gCGGCa-GCGaUG------CGUGCCUCUACUac -5'
9211 5' -55.1 NC_002512.2 + 82392 0.7 0.878942
Target:  5'- gGCgGUgGCUccGCGCGCGGGGGagccGGUGg -3'
miRNA:   3'- gCGgCAgCGA--UGCGUGCCUCUa---CUAC- -5'
9211 5' -55.1 NC_002512.2 + 83183 0.76 0.577414
Target:  5'- cCGCCGUCGuCUccgucgcccguccGCGCGCGGGGcgGggGg -3'
miRNA:   3'- -GCGGCAGC-GA-------------UGCGUGCCUCuaCuaC- -5'
9211 5' -55.1 NC_002512.2 + 147667 0.69 0.910878
Target:  5'- uCGCgGgggCGCgACG-ACGGGGAUGGUGu -3'
miRNA:   3'- -GCGgCa--GCGaUGCgUGCCUCUACUAC- -5'
9211 5' -55.1 NC_002512.2 + 33869 0.75 0.588281
Target:  5'- aGCCGgucccccccuUCGCguccGCGCACGGAGA-GGUGg -3'
miRNA:   3'- gCGGC----------AGCGa---UGCGUGCCUCUaCUAC- -5'
9211 5' -55.1 NC_002512.2 + 227680 0.7 0.871914
Target:  5'- gGCUGgcgaCGCUGCGCAacgGGGGAUG-UGg -3'
miRNA:   3'- gCGGCa---GCGAUGCGUg--CCUCUACuAC- -5'
9211 5' -55.1 NC_002512.2 + 26738 0.68 0.922101
Target:  5'- uCGCCGgcgcCGCUguACGcCACGGuGAUGGc- -3'
miRNA:   3'- -GCGGCa---GCGA--UGC-GUGCCuCUACUac -5'
9211 5' -55.1 NC_002512.2 + 47902 0.68 0.941833
Target:  5'- aCGCCGcCacCUACGUGCGGAuGGUGAc- -3'
miRNA:   3'- -GCGGCaGc-GAUGCGUGCCU-CUACUac -5'
9211 5' -55.1 NC_002512.2 + 154653 0.74 0.675769
Target:  5'- gGCCG-CGCUcgucaccgcgacgGCGUuaacgcgGCGGAGAUGAUGa -3'
miRNA:   3'- gCGGCaGCGA-------------UGCG-------UGCCUCUACUAC- -5'
9211 5' -55.1 NC_002512.2 + 7758 0.71 0.8002
Target:  5'- aGCCGggGCgguagucgGC-CGCGGAGAUGGUGg -3'
miRNA:   3'- gCGGCagCGa-------UGcGUGCCUCUACUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.