miRNA display CGI


Results 41 - 60 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 3' -53.3 NC_002512.2 + 169000 0.66 0.991106
Target:  5'- gCGg--UCGCgCGCCGGCUCGGCGauccggGCg -3'
miRNA:   3'- aGUacaAGCG-GUGGUUGGGCUGCa-----CG- -5'
9212 3' -53.3 NC_002512.2 + 143164 0.66 0.991106
Target:  5'- gUCcgGUUgGCCGCCcuCUCGuaGUGCg -3'
miRNA:   3'- -AGuaCAAgCGGUGGuuGGGCugCACG- -5'
9212 3' -53.3 NC_002512.2 + 133574 0.66 0.991106
Target:  5'- gUCGUGcg-GCgACCGGCCCGcccGCGgcgGCg -3'
miRNA:   3'- -AGUACaagCGgUGGUUGGGC---UGCa--CG- -5'
9212 3' -53.3 NC_002512.2 + 129549 0.66 0.991106
Target:  5'- gCGUGgccggCGcCCGCCAGuCCCGAgGcGCc -3'
miRNA:   3'- aGUACaa---GC-GGUGGUU-GGGCUgCaCG- -5'
9212 3' -53.3 NC_002512.2 + 148685 0.66 0.989896
Target:  5'- cCGUGgcccucgUCGCCGCUucGCCCGGauCGUcgGCg -3'
miRNA:   3'- aGUACa------AGCGGUGGu-UGGGCU--GCA--CG- -5'
9212 3' -53.3 NC_002512.2 + 206304 0.66 0.989896
Target:  5'- cUCGUGUUCGCU-CUcGCCCaGCG-GCc -3'
miRNA:   3'- -AGUACAAGCGGuGGuUGGGcUGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 220361 0.66 0.988561
Target:  5'- cCGUGgccgUgGCCGCCG--CCGcCGUGCu -3'
miRNA:   3'- aGUACa---AgCGGUGGUugGGCuGCACG- -5'
9212 3' -53.3 NC_002512.2 + 215403 0.66 0.988561
Target:  5'- cCAUGUUCGCCcuGCCcuGGCCCaAgG-GCg -3'
miRNA:   3'- aGUACAAGCGG--UGG--UUGGGcUgCaCG- -5'
9212 3' -53.3 NC_002512.2 + 185349 0.66 0.988561
Target:  5'- -gGUGgcCGCCGCCAucGCCguCGAC-UGCg -3'
miRNA:   3'- agUACaaGCGGUGGU--UGG--GCUGcACG- -5'
9212 3' -53.3 NC_002512.2 + 172929 0.66 0.988561
Target:  5'- cCAaGcUCGCCACCuucgccGCCUcgGugGUGCu -3'
miRNA:   3'- aGUaCaAGCGGUGGu-----UGGG--CugCACG- -5'
9212 3' -53.3 NC_002512.2 + 166647 0.66 0.988561
Target:  5'- aUCAgGgg-GCCACCGuguugcGCCCGA-GUGCg -3'
miRNA:   3'- -AGUaCaagCGGUGGU------UGGGCUgCACG- -5'
9212 3' -53.3 NC_002512.2 + 113999 0.66 0.988561
Target:  5'- aCAUGguccCGCCGCCGucggcCCCGcaGCG-GCa -3'
miRNA:   3'- aGUACaa--GCGGUGGUu----GGGC--UGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 105378 0.66 0.988561
Target:  5'- ---gGUUCagacCCAUCGACCCGGCGacGCu -3'
miRNA:   3'- aguaCAAGc---GGUGGUUGGGCUGCa-CG- -5'
9212 3' -53.3 NC_002512.2 + 218919 0.66 0.987093
Target:  5'- cUCGUGc-CGCUGCCcuGGCCCGAgG-GCg -3'
miRNA:   3'- -AGUACaaGCGGUGG--UUGGGCUgCaCG- -5'
9212 3' -53.3 NC_002512.2 + 204956 0.66 0.987093
Target:  5'- cUCGg--UCGCUgcggGCCgAGCCCGACGccGCg -3'
miRNA:   3'- -AGUacaAGCGG----UGG-UUGGGCUGCa-CG- -5'
9212 3' -53.3 NC_002512.2 + 206513 0.66 0.987093
Target:  5'- aCAUGUUCuCCACCGugauggucACCU--CGUGCu -3'
miRNA:   3'- aGUACAAGcGGUGGU--------UGGGcuGCACG- -5'
9212 3' -53.3 NC_002512.2 + 184974 0.66 0.987093
Target:  5'- ---cGUcCGCCGCgCGGCCguCGACGUGg -3'
miRNA:   3'- aguaCAaGCGGUG-GUUGG--GCUGCACg -5'
9212 3' -53.3 NC_002512.2 + 136990 0.66 0.987093
Target:  5'- --cUGUUCGCCucgACCAGCCUccagGAgGUGa -3'
miRNA:   3'- aguACAAGCGG---UGGUUGGG----CUgCACg -5'
9212 3' -53.3 NC_002512.2 + 201610 0.66 0.987093
Target:  5'- ---aGUUCuCCGCCAGCgCCGAgCGguagGCg -3'
miRNA:   3'- aguaCAAGcGGUGGUUG-GGCU-GCa---CG- -5'
9212 3' -53.3 NC_002512.2 + 213897 0.67 0.985484
Target:  5'- cUCGUGUUCuGCUccccgggggagAUCGACCgCGGCGagUGCg -3'
miRNA:   3'- -AGUACAAG-CGG-----------UGGUUGG-GCUGC--ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.