miRNA display CGI


Results 41 - 60 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 3' -53.3 NC_002512.2 + 116788 0.67 0.977482
Target:  5'- gUCAg---CGUCGCC-GCCCGucaguACGUGCg -3'
miRNA:   3'- -AGUacaaGCGGUGGuUGGGC-----UGCACG- -5'
9212 3' -53.3 NC_002512.2 + 17382 0.69 0.95251
Target:  5'- aUCGUGgucCGCguCCAGCCCGAgGUc- -3'
miRNA:   3'- -AGUACaa-GCGguGGUUGGGCUgCAcg -5'
9212 3' -53.3 NC_002512.2 + 10674 0.75 0.699166
Target:  5'- -----cUCGCCgagGCCGGCCCGGCaGUGCa -3'
miRNA:   3'- aguacaAGCGG---UGGUUGGGCUG-CACG- -5'
9212 3' -53.3 NC_002512.2 + 55163 0.67 0.977482
Target:  5'- aCGUGUUCGCCguGCCcauGACCU-ACG-GCa -3'
miRNA:   3'- aGUACAAGCGG--UGG---UUGGGcUGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 104262 0.76 0.668275
Target:  5'- gUCGUGUguggUCGCCGCCGGCgucuuucucgcguCCGGCG-GCg -3'
miRNA:   3'- -AGUACA----AGCGGUGGUUG-------------GGCUGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 91703 0.66 0.988561
Target:  5'- -gAUGUcCGCgaugcaCACgCAGCCCGGCGggUGCg -3'
miRNA:   3'- agUACAaGCG------GUG-GUUGGGCUGC--ACG- -5'
9212 3' -53.3 NC_002512.2 + 132277 0.73 0.793925
Target:  5'- aCAUGgcggCGCaCACCGagaacacggACCCGGCGUGg -3'
miRNA:   3'- aGUACaa--GCG-GUGGU---------UGGGCUGCACg -5'
9212 3' -53.3 NC_002512.2 + 47666 0.66 0.98842
Target:  5'- aCGUGg-CGCCGCCGaacgugcuguuccACCCGGgG-GCg -3'
miRNA:   3'- aGUACaaGCGGUGGU-------------UGGGCUgCaCG- -5'
9212 3' -53.3 NC_002512.2 + 23049 0.66 0.987093
Target:  5'- aUCGUGaa-GCUG--GACCUGACGUGCa -3'
miRNA:   3'- -AGUACaagCGGUggUUGGGCUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 69549 0.67 0.985484
Target:  5'- cUCA---UCGUCAC---CCCGACGUGCc -3'
miRNA:   3'- -AGUacaAGCGGUGguuGGGCUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 196912 0.67 0.983726
Target:  5'- cCGUGUcgaccaacggCGUCACaCGucuCCCGGCGUGUu -3'
miRNA:   3'- aGUACAa---------GCGGUG-GUu--GGGCUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 51048 0.67 0.981811
Target:  5'- aCGUGU--GCCugCGACCCGAgcaCGUccggGCg -3'
miRNA:   3'- aGUACAagCGGugGUUGGGCU---GCA----CG- -5'
9212 3' -53.3 NC_002512.2 + 97853 0.67 0.978403
Target:  5'- cUCcgGUcccuggccgacgacgUCGCCGCCGAggucccCCCGGCGcccgggGCg -3'
miRNA:   3'- -AGuaCA---------------AGCGGUGGUU------GGGCUGCa-----CG- -5'
9212 3' -53.3 NC_002512.2 + 117964 0.68 0.975053
Target:  5'- gCGUGgaCGCUcCCcGCCUGGcCGUGCu -3'
miRNA:   3'- aGUACaaGCGGuGGuUGGGCU-GCACG- -5'
9212 3' -53.3 NC_002512.2 + 31717 0.68 0.972166
Target:  5'- aCGUGgaggucCGCCggccggcGCCGACCCGGCccGCg -3'
miRNA:   3'- aGUACaa----GCGG-------UGGUUGGGCUGcaCG- -5'
9212 3' -53.3 NC_002512.2 + 28927 0.68 0.963414
Target:  5'- aCGUGUUCGaucugcCUACC-ACUCGACG-GCg -3'
miRNA:   3'- aGUACAAGC------GGUGGuUGGGCUGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 59921 0.69 0.959642
Target:  5'- ---cGUUCGCC-CCGACCCuguucuacaugugGGCGgGCa -3'
miRNA:   3'- aguaCAAGCGGuGGUUGGG-------------CUGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 153364 0.7 0.929867
Target:  5'- aUCAgaacgUCaGCCGgCAACUgGACGUGCg -3'
miRNA:   3'- -AGUaca--AG-CGGUgGUUGGgCUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 44385 0.71 0.895104
Target:  5'- ---aGgcCcCCGCgCAGCCCGGCGUGCg -3'
miRNA:   3'- aguaCaaGcGGUG-GUUGGGCUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 20722 0.72 0.83655
Target:  5'- aUCuUGcgCGCCguGCCGACgaCGACGUGCu -3'
miRNA:   3'- -AGuACaaGCGG--UGGUUGg-GCUGCACG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.