miRNA display CGI


Results 41 - 60 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 3' -53.3 NC_002512.2 + 115695 0.73 0.828356
Target:  5'- cUCAUG---GCCGCCgGGCCCGACGccgGCg -3'
miRNA:   3'- -AGUACaagCGGUGG-UUGGGCUGCa--CG- -5'
9212 3' -53.3 NC_002512.2 + 13389 0.67 0.983726
Target:  5'- ---gGUUCGuCCGCU-ACCUGACGcGCu -3'
miRNA:   3'- aguaCAAGC-GGUGGuUGGGCUGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 151876 0.66 0.988561
Target:  5'- cUCGUGggCGCCGgCGAUCCG-CGg-- -3'
miRNA:   3'- -AGUACaaGCGGUgGUUGGGCuGCacg -5'
9212 3' -53.3 NC_002512.2 + 19065 0.66 0.988561
Target:  5'- cCGUG-UC-CCACCGgagcgcgaGCCCGAUGaUGCc -3'
miRNA:   3'- aGUACaAGcGGUGGU--------UGGGCUGC-ACG- -5'
9212 3' -53.3 NC_002512.2 + 113141 0.67 0.979733
Target:  5'- cUCGgccugGUccaUCGCCAUCAGCCgGgccacgucggACGUGCc -3'
miRNA:   3'- -AGUa----CA---AGCGGUGGUUGGgC----------UGCACG- -5'
9212 3' -53.3 NC_002512.2 + 31291 0.69 0.948436
Target:  5'- aCGUGacgggccagaucUUCGCCAUCAACUCGAgGaUGUa -3'
miRNA:   3'- aGUAC------------AAGCGGUGGUUGGGCUgC-ACG- -5'
9212 3' -53.3 NC_002512.2 + 130139 0.73 0.819988
Target:  5'- -gGUGgugUCGCgGCCGcgggGCCCGGCG-GCg -3'
miRNA:   3'- agUACa--AGCGgUGGU----UGGGCUGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 132277 0.73 0.793925
Target:  5'- aCAUGgcggCGCaCACCGagaacacggACCCGGCGUGg -3'
miRNA:   3'- aGUACaa--GCG-GUGGU---------UGGGCUGCACg -5'
9212 3' -53.3 NC_002512.2 + 155598 0.68 0.963082
Target:  5'- gCGUGaUCGCC-CC-ACCCGucggaacGCGUGUg -3'
miRNA:   3'- aGUACaAGCGGuGGuUGGGC-------UGCACG- -5'
9212 3' -53.3 NC_002512.2 + 6084 0.67 0.977482
Target:  5'- gUCccGgcggUCGCCGCCGAcgucCCCGGCGa-- -3'
miRNA:   3'- -AGuaCa---AGCGGUGGUU----GGGCUGCacg -5'
9212 3' -53.3 NC_002512.2 + 81682 0.68 0.975053
Target:  5'- aCAUGagCGCC-CgCAGCUCGGCG-GCc -3'
miRNA:   3'- aGUACaaGCGGuG-GUUGGGCUGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 59921 0.69 0.959642
Target:  5'- ---cGUUCGCC-CCGACCCuguucuacaugugGGCGgGCa -3'
miRNA:   3'- aguaCAAGCGGuGGUUGGG-------------CUGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 60450 0.72 0.857758
Target:  5'- -gGUGUgCGCCGCCAACauCCGcgcgacggacacuaGCGUGCu -3'
miRNA:   3'- agUACAaGCGGUGGUUG--GGC--------------UGCACG- -5'
9212 3' -53.3 NC_002512.2 + 155068 0.67 0.985484
Target:  5'- --uUGUUCGuCCGCCGccgcugccggguGCCCgGGCGUcaGCa -3'
miRNA:   3'- aguACAAGC-GGUGGU------------UGGG-CUGCA--CG- -5'
9212 3' -53.3 NC_002512.2 + 10465 0.67 0.985484
Target:  5'- ---aGgcCGCCGCCGcCCCGgGCGUGg -3'
miRNA:   3'- aguaCaaGCGGUGGUuGGGC-UGCACg -5'
9212 3' -53.3 NC_002512.2 + 97853 0.67 0.978403
Target:  5'- cUCcgGUcccuggccgacgacgUCGCCGCCGAggucccCCCGGCGcccgggGCg -3'
miRNA:   3'- -AGuaCA---------------AGCGGUGGUU------GGGCUGCa-----CG- -5'
9212 3' -53.3 NC_002512.2 + 16797 0.66 0.988135
Target:  5'- gUCGUccUCGCCGCCGacgaagagcacguaGCCCG-CGggGCu -3'
miRNA:   3'- -AGUAcaAGCGGUGGU--------------UGGGCuGCa-CG- -5'
9212 3' -53.3 NC_002512.2 + 72354 0.66 0.993182
Target:  5'- gUCAgcgGgUUGuCCACCAcguaGCCCGACGcGUu -3'
miRNA:   3'- -AGUa--CaAGC-GGUGGU----UGGGCUGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 92738 0.66 0.988975
Target:  5'- -gAUGUUCGUcauggaggccaggcuCACCGAUacgucguuguagaUCGGCGUGCg -3'
miRNA:   3'- agUACAAGCG---------------GUGGUUG-------------GGCUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 23049 0.66 0.987093
Target:  5'- aUCGUGaa-GCUG--GACCUGACGUGCa -3'
miRNA:   3'- -AGUACaagCGGUggUUGGGCUGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.