miRNA display CGI


Results 21 - 40 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 3' -53.3 NC_002512.2 + 23544 1.12 0.00575
Target:  5'- aUCAUGUUCGCCACCAACCCGACGUGCc -3'
miRNA:   3'- -AGUACAAGCGGUGGUUGGGCUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 6084 0.67 0.977482
Target:  5'- gUCccGgcggUCGCCGCCGAcgucCCCGGCGa-- -3'
miRNA:   3'- -AGuaCa---AGCGGUGGUU----GGGCUGCacg -5'
9212 3' -53.3 NC_002512.2 + 117964 0.68 0.975053
Target:  5'- gCGUGgaCGCUcCCcGCCUGGcCGUGCu -3'
miRNA:   3'- aGUACaaGCGGuGGuUGGGCU-GCACG- -5'
9212 3' -53.3 NC_002512.2 + 12520 0.69 0.959995
Target:  5'- aCGUGcaccagGCCGCCAugCUGAacuCGUGCg -3'
miRNA:   3'- aGUACaag---CGGUGGUugGGCU---GCACG- -5'
9212 3' -53.3 NC_002512.2 + 20635 0.7 0.919199
Target:  5'- gUCcgGUUCGCCgaGCgGGCCCGGgacaggagcuCGUGUu -3'
miRNA:   3'- -AGuaCAAGCGG--UGgUUGGGCU----------GCACG- -5'
9212 3' -53.3 NC_002512.2 + 54612 0.67 0.979733
Target:  5'- aCGUGUacgCgGCCGCCAgcuACCCGcCGaGCg -3'
miRNA:   3'- aGUACAa--G-CGGUGGU---UGGGCuGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 55163 0.67 0.977482
Target:  5'- aCGUGUUCGCCguGCCcauGACCU-ACG-GCa -3'
miRNA:   3'- aGUACAAGCGG--UGG---UUGGGcUGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 28534 0.72 0.844565
Target:  5'- gUCggGUcCGCCGCC-GCCCGAUGUcgGCc -3'
miRNA:   3'- -AGuaCAaGCGGUGGuUGGGCUGCA--CG- -5'
9212 3' -53.3 NC_002512.2 + 72755 0.68 0.96875
Target:  5'- cCcgGgccCGCCGCCGACCCccgacgccgggaggGACGUcGCc -3'
miRNA:   3'- aGuaCaa-GCGGUGGUUGGG--------------CUGCA-CG- -5'
9212 3' -53.3 NC_002512.2 + 28927 0.68 0.963414
Target:  5'- aCGUGUUCGaucugcCUACC-ACUCGACG-GCg -3'
miRNA:   3'- aGUACAAGC------GGUGGuUGGGCUGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 115695 0.73 0.828356
Target:  5'- cUCAUG---GCCGCCgGGCCCGACGccgGCg -3'
miRNA:   3'- -AGUACaagCGGUGG-UUGGGCUGCa--CG- -5'
9212 3' -53.3 NC_002512.2 + 130139 0.73 0.819988
Target:  5'- -gGUGgugUCGCgGCCGcgggGCCCGGCG-GCg -3'
miRNA:   3'- agUACa--AGCGgUGGU----UGGGCUGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 13389 0.67 0.983726
Target:  5'- ---gGUUCGuCCGCU-ACCUGACGcGCu -3'
miRNA:   3'- aguaCAAGC-GGUGGuUGGGCUGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 113141 0.67 0.979733
Target:  5'- cUCGgccugGUccaUCGCCAUCAGCCgGgccacgucggACGUGCc -3'
miRNA:   3'- -AGUa----CA---AGCGGUGGUUGGgC----------UGCACG- -5'
9212 3' -53.3 NC_002512.2 + 81682 0.68 0.975053
Target:  5'- aCAUGagCGCC-CgCAGCUCGGCG-GCc -3'
miRNA:   3'- aGUACaaGCGGuG-GUUGGGCUGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 31291 0.69 0.948436
Target:  5'- aCGUGacgggccagaucUUCGCCAUCAACUCGAgGaUGUa -3'
miRNA:   3'- aGUAC------------AAGCGGUGGUUGGGCUgC-ACG- -5'
9212 3' -53.3 NC_002512.2 + 114191 0.7 0.924114
Target:  5'- aUCuUGUUCuCCACCGugcuguaggcccgGCCCGAgcccaCGUGCa -3'
miRNA:   3'- -AGuACAAGcGGUGGU-------------UGGGCU-----GCACG- -5'
9212 3' -53.3 NC_002512.2 + 132277 0.73 0.793925
Target:  5'- aCAUGgcggCGCaCACCGagaacacggACCCGGCGUGg -3'
miRNA:   3'- aGUACaa--GCG-GUGGU---------UGGGCUGCACg -5'
9212 3' -53.3 NC_002512.2 + 155598 0.68 0.963082
Target:  5'- gCGUGaUCGCC-CC-ACCCGucggaacGCGUGUg -3'
miRNA:   3'- aGUACaAGCGGuGGuUGGGC-------UGCACG- -5'
9212 3' -53.3 NC_002512.2 + 25865 0.68 0.96963
Target:  5'- ---aGUUCGCCGUCGGCCCGcACGaaGCc -3'
miRNA:   3'- aguaCAAGCGGUGGUUGGGC-UGCa-CG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.