Results 21 - 40 of 175 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9212 | 3' | -53.3 | NC_002512.2 | + | 28927 | 0.68 | 0.963414 |
Target: 5'- aCGUGUUCGaucugcCUACC-ACUCGACG-GCg -3' miRNA: 3'- aGUACAAGC------GGUGGuUGGGCUGCaCG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 59921 | 0.69 | 0.959642 |
Target: 5'- ---cGUUCGCC-CCGACCCuguucuacaugugGGCGgGCa -3' miRNA: 3'- aguaCAAGCGGuGGUUGGG-------------CUGCaCG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 91826 | 0.71 | 0.881712 |
Target: 5'- cUCGUGUUCGUCACCcgGAUCCGGuCccGCa -3' miRNA: 3'- -AGUACAAGCGGUGG--UUGGGCU-GcaCG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 88585 | 0.75 | 0.709032 |
Target: 5'- gUCGUcgUCGCCGCCgGugCCGcCGUGCg -3' miRNA: 3'- -AGUAcaAGCGGUGG-UugGGCuGCACG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 192151 | 0.67 | 0.977482 |
Target: 5'- cCGUcgUCGUgACCGcCuuGACGUGCa -3' miRNA: 3'- aGUAcaAGCGgUGGUuGggCUGCACG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 57478 | 0.68 | 0.972438 |
Target: 5'- aCGUGcUCcaGCCGggcggUCAuCCCGGCGUGCa -3' miRNA: 3'- aGUACaAG--CGGU-----GGUuGGGCUGCACG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 17382 | 0.69 | 0.95251 |
Target: 5'- aUCGUGgucCGCguCCAGCCCGAgGUc- -3' miRNA: 3'- -AGUACaa-GCGguGGUUGGGCUgCAcg -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 10674 | 0.75 | 0.699166 |
Target: 5'- -----cUCGCCgagGCCGGCCCGGCaGUGCa -3' miRNA: 3'- aguacaAGCGG---UGGUUGGGCUG-CACG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 31717 | 0.68 | 0.972166 |
Target: 5'- aCGUGgaggucCGCCggccggcGCCGACCCGGCccGCg -3' miRNA: 3'- aGUACaa----GCGG-------UGGUUGGGCUGcaCG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 104262 | 0.76 | 0.668275 |
Target: 5'- gUCGUGUguggUCGCCGCCGGCgucuuucucgcguCCGGCG-GCg -3' miRNA: 3'- -AGUACA----AGCGGUGGUUG-------------GGCUGCaCG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 140842 | 0.69 | 0.95251 |
Target: 5'- ---cGUUCGCCACCGACgaGAuccuCGUGg -3' miRNA: 3'- aguaCAAGCGGUGGUUGggCU----GCACg -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 134768 | 0.68 | 0.966624 |
Target: 5'- gUCcgGUUCGUCgGCgGGCCCGcCGUcGCc -3' miRNA: 3'- -AGuaCAAGCGG-UGgUUGGGCuGCA-CG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 153364 | 0.7 | 0.929867 |
Target: 5'- aUCAgaacgUCaGCCGgCAACUgGACGUGCg -3' miRNA: 3'- -AGUaca--AG-CGGUgGUUGGgCUGCACG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 44385 | 0.71 | 0.895104 |
Target: 5'- ---aGgcCcCCGCgCAGCCCGGCGUGCg -3' miRNA: 3'- aguaCaaGcGGUG-GUUGGGCUGCACG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 20722 | 0.72 | 0.83655 |
Target: 5'- aUCuUGcgCGCCguGCCGACgaCGACGUGCu -3' miRNA: 3'- -AGuACaaGCGG--UGGUUGg-GCUGCACG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 132277 | 0.73 | 0.793925 |
Target: 5'- aCAUGgcggCGCaCACCGagaacacggACCCGGCGUGg -3' miRNA: 3'- aGUACaa--GCG-GUGGU---------UGGGCUGCACg -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 51048 | 0.67 | 0.981811 |
Target: 5'- aCGUGU--GCCugCGACCCGAgcaCGUccggGCg -3' miRNA: 3'- aGUACAagCGGugGUUGGGCU---GCA----CG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 97853 | 0.67 | 0.978403 |
Target: 5'- cUCcgGUcccuggccgacgacgUCGCCGCCGAggucccCCCGGCGcccgggGCg -3' miRNA: 3'- -AGuaCA---------------AGCGGUGGUU------GGGCUGCa-----CG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 16239 | 0.67 | 0.977482 |
Target: 5'- gUCAUcGUcgUCGUCGCCGucGCCCG-CG-GCg -3' miRNA: 3'- -AGUA-CA--AGCGGUGGU--UGGGCuGCaCG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 81682 | 0.68 | 0.975053 |
Target: 5'- aCAUGagCGCC-CgCAGCUCGGCG-GCc -3' miRNA: 3'- aGUACaaGCGGuG-GUUGGGCUGCaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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