Results 21 - 40 of 175 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9212 | 3' | -53.3 | NC_002512.2 | + | 23544 | 1.12 | 0.00575 |
Target: 5'- aUCAUGUUCGCCACCAACCCGACGUGCc -3' miRNA: 3'- -AGUACAAGCGGUGGUUGGGCUGCACG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 6084 | 0.67 | 0.977482 |
Target: 5'- gUCccGgcggUCGCCGCCGAcgucCCCGGCGa-- -3' miRNA: 3'- -AGuaCa---AGCGGUGGUU----GGGCUGCacg -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 117964 | 0.68 | 0.975053 |
Target: 5'- gCGUGgaCGCUcCCcGCCUGGcCGUGCu -3' miRNA: 3'- aGUACaaGCGGuGGuUGGGCU-GCACG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 12520 | 0.69 | 0.959995 |
Target: 5'- aCGUGcaccagGCCGCCAugCUGAacuCGUGCg -3' miRNA: 3'- aGUACaag---CGGUGGUugGGCU---GCACG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 20635 | 0.7 | 0.919199 |
Target: 5'- gUCcgGUUCGCCgaGCgGGCCCGGgacaggagcuCGUGUu -3' miRNA: 3'- -AGuaCAAGCGG--UGgUUGGGCU----------GCACG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 54612 | 0.67 | 0.979733 |
Target: 5'- aCGUGUacgCgGCCGCCAgcuACCCGcCGaGCg -3' miRNA: 3'- aGUACAa--G-CGGUGGU---UGGGCuGCaCG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 55163 | 0.67 | 0.977482 |
Target: 5'- aCGUGUUCGCCguGCCcauGACCU-ACG-GCa -3' miRNA: 3'- aGUACAAGCGG--UGG---UUGGGcUGCaCG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 28534 | 0.72 | 0.844565 |
Target: 5'- gUCggGUcCGCCGCC-GCCCGAUGUcgGCc -3' miRNA: 3'- -AGuaCAaGCGGUGGuUGGGCUGCA--CG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 72755 | 0.68 | 0.96875 |
Target: 5'- cCcgGgccCGCCGCCGACCCccgacgccgggaggGACGUcGCc -3' miRNA: 3'- aGuaCaa-GCGGUGGUUGGG--------------CUGCA-CG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 28927 | 0.68 | 0.963414 |
Target: 5'- aCGUGUUCGaucugcCUACC-ACUCGACG-GCg -3' miRNA: 3'- aGUACAAGC------GGUGGuUGGGCUGCaCG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 115695 | 0.73 | 0.828356 |
Target: 5'- cUCAUG---GCCGCCgGGCCCGACGccgGCg -3' miRNA: 3'- -AGUACaagCGGUGG-UUGGGCUGCa--CG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 130139 | 0.73 | 0.819988 |
Target: 5'- -gGUGgugUCGCgGCCGcgggGCCCGGCG-GCg -3' miRNA: 3'- agUACa--AGCGgUGGU----UGGGCUGCaCG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 13389 | 0.67 | 0.983726 |
Target: 5'- ---gGUUCGuCCGCU-ACCUGACGcGCu -3' miRNA: 3'- aguaCAAGC-GGUGGuUGGGCUGCaCG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 113141 | 0.67 | 0.979733 |
Target: 5'- cUCGgccugGUccaUCGCCAUCAGCCgGgccacgucggACGUGCc -3' miRNA: 3'- -AGUa----CA---AGCGGUGGUUGGgC----------UGCACG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 81682 | 0.68 | 0.975053 |
Target: 5'- aCAUGagCGCC-CgCAGCUCGGCG-GCc -3' miRNA: 3'- aGUACaaGCGGuG-GUUGGGCUGCaCG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 31291 | 0.69 | 0.948436 |
Target: 5'- aCGUGacgggccagaucUUCGCCAUCAACUCGAgGaUGUa -3' miRNA: 3'- aGUAC------------AAGCGGUGGUUGGGCUgC-ACG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 114191 | 0.7 | 0.924114 |
Target: 5'- aUCuUGUUCuCCACCGugcuguaggcccgGCCCGAgcccaCGUGCa -3' miRNA: 3'- -AGuACAAGcGGUGGU-------------UGGGCU-----GCACG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 132277 | 0.73 | 0.793925 |
Target: 5'- aCAUGgcggCGCaCACCGagaacacggACCCGGCGUGg -3' miRNA: 3'- aGUACaa--GCG-GUGGU---------UGGGCUGCACg -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 155598 | 0.68 | 0.963082 |
Target: 5'- gCGUGaUCGCC-CC-ACCCGucggaacGCGUGUg -3' miRNA: 3'- aGUACaAGCGGuGGuUGGGC-------UGCACG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 25865 | 0.68 | 0.96963 |
Target: 5'- ---aGUUCGCCGUCGGCCCGcACGaaGCc -3' miRNA: 3'- aguaCAAGCGGUGGUUGGGC-UGCa-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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