miRNA display CGI


Results 21 - 40 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 3' -53.3 NC_002512.2 + 23544 1.12 0.00575
Target:  5'- aUCAUGUUCGCCACCAACCCGACGUGCc -3'
miRNA:   3'- -AGUACAAGCGGUGGUUGGGCUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 25865 0.68 0.96963
Target:  5'- ---aGUUCGCCGUCGGCCCGcACGaaGCc -3'
miRNA:   3'- aguaCAAGCGGUGGUUGGGC-UGCa-CG- -5'
9212 3' -53.3 NC_002512.2 + 27028 0.66 0.991106
Target:  5'- aUCAUGa--GCUACgaCAGCUaCGGCGUGCu -3'
miRNA:   3'- -AGUACaagCGGUG--GUUGG-GCUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 28534 0.72 0.844565
Target:  5'- gUCggGUcCGCCGCC-GCCCGAUGUcgGCc -3'
miRNA:   3'- -AGuaCAaGCGGUGGuUGGGCUGCA--CG- -5'
9212 3' -53.3 NC_002512.2 + 28927 0.68 0.963414
Target:  5'- aCGUGUUCGaucugcCUACC-ACUCGACG-GCg -3'
miRNA:   3'- aGUACAAGC------GGUGGuUGGGCUGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 31291 0.69 0.948436
Target:  5'- aCGUGacgggccagaucUUCGCCAUCAACUCGAgGaUGUa -3'
miRNA:   3'- aGUAC------------AAGCGGUGGUUGGGCUgC-ACG- -5'
9212 3' -53.3 NC_002512.2 + 31717 0.68 0.972166
Target:  5'- aCGUGgaggucCGCCggccggcGCCGACCCGGCccGCg -3'
miRNA:   3'- aGUACaa----GCGG-------UGGUUGGGCUGcaCG- -5'
9212 3' -53.3 NC_002512.2 + 38930 0.66 0.993182
Target:  5'- -------gGCCGCCGcggcgggcGCCCG-CGUGCg -3'
miRNA:   3'- aguacaagCGGUGGU--------UGGGCuGCACG- -5'
9212 3' -53.3 NC_002512.2 + 41249 0.66 0.992199
Target:  5'- ------cCGCCGCCGgcgcccuugcgGCCCGAgcgcuCGUGCu -3'
miRNA:   3'- aguacaaGCGGUGGU-----------UGGGCU-----GCACG- -5'
9212 3' -53.3 NC_002512.2 + 44385 0.71 0.895104
Target:  5'- ---aGgcCcCCGCgCAGCCCGGCGUGCg -3'
miRNA:   3'- aguaCaaGcGGUG-GUUGGGCUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 47666 0.66 0.98842
Target:  5'- aCGUGg-CGCCGCCGaacgugcuguuccACCCGGgG-GCg -3'
miRNA:   3'- aGUACaaGCGGUGGU-------------UGGGCUgCaCG- -5'
9212 3' -53.3 NC_002512.2 + 47899 0.66 0.988561
Target:  5'- ---aGgaCGCCGCC-ACCU-ACGUGCg -3'
miRNA:   3'- aguaCaaGCGGUGGuUGGGcUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 50588 0.66 0.993182
Target:  5'- -----cUCGCCGCCcgcgGACUgGACgGUGCg -3'
miRNA:   3'- aguacaAGCGGUGG----UUGGgCUG-CACG- -5'
9212 3' -53.3 NC_002512.2 + 51048 0.67 0.981811
Target:  5'- aCGUGU--GCCugCGACCCGAgcaCGUccggGCg -3'
miRNA:   3'- aGUACAagCGGugGUUGGGCU---GCA----CG- -5'
9212 3' -53.3 NC_002512.2 + 54090 0.66 0.993182
Target:  5'- gCcgGgaCGCCGCCAagcugucgGCCugCGACGUGa -3'
miRNA:   3'- aGuaCaaGCGGUGGU--------UGG--GCUGCACg -5'
9212 3' -53.3 NC_002512.2 + 54612 0.67 0.979733
Target:  5'- aCGUGUacgCgGCCGCCAgcuACCCGcCGaGCg -3'
miRNA:   3'- aGUACAa--G-CGGUGGU---UGGGCuGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 55163 0.67 0.977482
Target:  5'- aCGUGUUCGCCguGCCcauGACCU-ACG-GCa -3'
miRNA:   3'- aGUACAAGCGG--UGG---UUGGGcUGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 56264 0.66 0.989896
Target:  5'- ---gGUUCGCCGCCG---CGGCGgagGCg -3'
miRNA:   3'- aguaCAAGCGGUGGUuggGCUGCa--CG- -5'
9212 3' -53.3 NC_002512.2 + 57478 0.68 0.972438
Target:  5'- aCGUGcUCcaGCCGggcggUCAuCCCGGCGUGCa -3'
miRNA:   3'- aGUACaAG--CGGU-----GGUuGGGCUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 59564 0.69 0.956362
Target:  5'- cUCAUGUUgcaaGCCGCC-ACCCcAUGUGa -3'
miRNA:   3'- -AGUACAAg---CGGUGGuUGGGcUGCACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.