miRNA display CGI


Results 21 - 40 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 3' -53.3 NC_002512.2 + 206513 0.66 0.987093
Target:  5'- aCAUGUUCuCCACCGugauggucACCU--CGUGCu -3'
miRNA:   3'- aGUACAAGcGGUGGU--------UGGGcuGCACG- -5'
9212 3' -53.3 NC_002512.2 + 206304 0.66 0.989896
Target:  5'- cUCGUGUUCGCU-CUcGCCCaGCG-GCc -3'
miRNA:   3'- -AGUACAAGCGGuGGuUGGGcUGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 205040 0.66 0.993182
Target:  5'- ---cGUcCGCCGCCGACCgGccGCGgGCc -3'
miRNA:   3'- aguaCAaGCGGUGGUUGGgC--UGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 204956 0.66 0.987093
Target:  5'- cUCGg--UCGCUgcggGCCgAGCCCGACGccGCg -3'
miRNA:   3'- -AGUacaAGCGG----UGG-UUGGGCUGCa-CG- -5'
9212 3' -53.3 NC_002512.2 + 201610 0.66 0.987093
Target:  5'- ---aGUUCuCCGCCAGCgCCGAgCGguagGCg -3'
miRNA:   3'- aguaCAAGcGGUGGUUG-GGCU-GCa---CG- -5'
9212 3' -53.3 NC_002512.2 + 200786 0.67 0.977482
Target:  5'- cCAUGgcCGCCGCCG-CCgaaGACGagGCg -3'
miRNA:   3'- aGUACaaGCGGUGGUuGGg--CUGCa-CG- -5'
9212 3' -53.3 NC_002512.2 + 196912 0.67 0.983726
Target:  5'- cCGUGUcgaccaacggCGUCACaCGucuCCCGGCGUGUu -3'
miRNA:   3'- aGUACAa---------GCGGUG-GUu--GGGCUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 196702 0.66 0.991106
Target:  5'- ------cCGuCCGCCAGCCCGACcG-GCu -3'
miRNA:   3'- aguacaaGC-GGUGGUUGGGCUG-CaCG- -5'
9212 3' -53.3 NC_002512.2 + 196623 0.68 0.972438
Target:  5'- cCcgGUUCGCCcgggugGCCGACgCCG-UGUGUc -3'
miRNA:   3'- aGuaCAAGCGG------UGGUUG-GGCuGCACG- -5'
9212 3' -53.3 NC_002512.2 + 195216 0.66 0.992199
Target:  5'- aUCGUGUccgaugugUCGUCGCCcgcgauguCCCGACGaaGCc -3'
miRNA:   3'- -AGUACA--------AGCGGUGGuu------GGGCUGCa-CG- -5'
9212 3' -53.3 NC_002512.2 + 193030 0.76 0.639124
Target:  5'- gCAaGUaCGCCuAUCGGCCCGACGUGUc -3'
miRNA:   3'- aGUaCAaGCGG-UGGUUGGGCUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 192151 0.67 0.977482
Target:  5'- cCGUcgUCGUgACCGcCuuGACGUGCa -3'
miRNA:   3'- aGUAcaAGCGgUGGUuGggCUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 187881 0.7 0.913518
Target:  5'- gUC-UGUaCGUCACCGACCgGACGUuCa -3'
miRNA:   3'- -AGuACAaGCGGUGGUUGGgCUGCAcG- -5'
9212 3' -53.3 NC_002512.2 + 187176 0.67 0.979733
Target:  5'- aCGUGgccCGCCAUCu--UCGGCGUGCc -3'
miRNA:   3'- aGUACaa-GCGGUGGuugGGCUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 186577 0.73 0.793925
Target:  5'- gUC-UGUUCGCCACCGGccgccucuacCCCGACcUGUu -3'
miRNA:   3'- -AGuACAAGCGGUGGUU----------GGGCUGcACG- -5'
9212 3' -53.3 NC_002512.2 + 185349 0.66 0.988561
Target:  5'- -gGUGgcCGCCGCCAucGCCguCGAC-UGCg -3'
miRNA:   3'- agUACaaGCGGUGGU--UGG--GCUGcACG- -5'
9212 3' -53.3 NC_002512.2 + 184974 0.66 0.987093
Target:  5'- ---cGUcCGCCGCgCGGCCguCGACGUGg -3'
miRNA:   3'- aguaCAaGCGGUG-GUUGG--GCUGCACg -5'
9212 3' -53.3 NC_002512.2 + 184359 0.68 0.963414
Target:  5'- cCAag-UCGCCGCCGccGCCCGccGCGgGCg -3'
miRNA:   3'- aGUacaAGCGGUGGU--UGGGC--UGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 184310 0.8 0.46347
Target:  5'- gUCAUGagCGUgGCCAGCUgCGACGUGCg -3'
miRNA:   3'- -AGUACaaGCGgUGGUUGG-GCUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 179857 0.73 0.802765
Target:  5'- gCGUGUgcgCGcCCACCGucACgaCGACGUGCa -3'
miRNA:   3'- aGUACAa--GC-GGUGGU--UGg-GCUGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.