miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 3' -53.3 NC_002512.2 + 223347 0.69 0.939611
Target:  5'- cUCAgGUUCGucuucuccgcCCGCCGAUCCGGCGUc- -3'
miRNA:   3'- -AGUaCAAGC----------GGUGGUUGGGCUGCAcg -5'
9212 3' -53.3 NC_002512.2 + 222712 0.69 0.95251
Target:  5'- -aGUGcgUCGCCACCuGCCUgcugGACG-GCa -3'
miRNA:   3'- agUACa-AGCGGUGGuUGGG----CUGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 220815 0.67 0.983726
Target:  5'- cUCGUGguccCGCCGCUGGCCgugcucguCGACGgGCu -3'
miRNA:   3'- -AGUACaa--GCGGUGGUUGG--------GCUGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 220647 0.7 0.934855
Target:  5'- gUCcUGUggcgcgagCGCCACCuGGCCCGccgcguCGUGCu -3'
miRNA:   3'- -AGuACAa-------GCGGUGG-UUGGGCu-----GCACG- -5'
9212 3' -53.3 NC_002512.2 + 220573 0.68 0.971616
Target:  5'- cCGUG--CGCCGCCcgauggagugccggGAUCCGGuCGUGCg -3'
miRNA:   3'- aGUACaaGCGGUGG--------------UUGGGCU-GCACG- -5'
9212 3' -53.3 NC_002512.2 + 220361 0.66 0.988561
Target:  5'- cCGUGgccgUgGCCGCCG--CCGcCGUGCu -3'
miRNA:   3'- aGUACa---AgCGGUGGUugGGCuGCACG- -5'
9212 3' -53.3 NC_002512.2 + 219337 0.71 0.901468
Target:  5'- gCGUGgccCGCCGgCuGCCCGGCGUccGCg -3'
miRNA:   3'- aGUACaa-GCGGUgGuUGGGCUGCA--CG- -5'
9212 3' -53.3 NC_002512.2 + 218919 0.66 0.987093
Target:  5'- cUCGUGc-CGCUGCCcuGGCCCGAgG-GCg -3'
miRNA:   3'- -AGUACaaGCGGUGG--UUGGGCUgCaCG- -5'
9212 3' -53.3 NC_002512.2 + 217563 0.67 0.979733
Target:  5'- gUCGcGUUCGCgacggcgaGCCggUCCGGCG-GCg -3'
miRNA:   3'- -AGUaCAAGCGg-------UGGuuGGGCUGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 217208 0.67 0.983726
Target:  5'- gCAUccUCGCCAgccggcCCGugCCGAUGUGg -3'
miRNA:   3'- aGUAcaAGCGGU------GGUugGGCUGCACg -5'
9212 3' -53.3 NC_002512.2 + 215403 0.66 0.988561
Target:  5'- cCAUGUUCGCCcuGCCcuGGCCCaAgG-GCg -3'
miRNA:   3'- aGUACAAGCGG--UGG--UUGGGcUgCaCG- -5'
9212 3' -53.3 NC_002512.2 + 213897 0.67 0.985484
Target:  5'- cUCGUGUUCuGCUccccgggggagAUCGACCgCGGCGagUGCg -3'
miRNA:   3'- -AGUACAAG-CGG-----------UGGUUGG-GCUGC--ACG- -5'
9212 3' -53.3 NC_002512.2 + 213228 0.68 0.966624
Target:  5'- gUCGUGgcCGCCaacggcGCCGGCCgGAUcUGCg -3'
miRNA:   3'- -AGUACaaGCGG------UGGUUGGgCUGcACG- -5'
9212 3' -53.3 NC_002512.2 + 211534 0.7 0.929867
Target:  5'- cUCAUGUUCGaCAgCAugUuCGGCGUGUg -3'
miRNA:   3'- -AGUACAAGCgGUgGUugG-GCUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 211268 0.68 0.972438
Target:  5'- cCAUGUUCGaCCGCUuuugcgaguGCgCCGA-GUGCg -3'
miRNA:   3'- aGUACAAGC-GGUGGu--------UG-GGCUgCACG- -5'
9212 3' -53.3 NC_002512.2 + 211183 0.68 0.963414
Target:  5'- -----gUCGCCGCCcuGCUCGGgGUGCc -3'
miRNA:   3'- aguacaAGCGGUGGu-UGGGCUgCACG- -5'
9212 3' -53.3 NC_002512.2 + 210527 0.66 0.993182
Target:  5'- -------gGCCGCCGAgccCCCGACGguccgGCa -3'
miRNA:   3'- aguacaagCGGUGGUU---GGGCUGCa----CG- -5'
9212 3' -53.3 NC_002512.2 + 209100 0.67 0.985484
Target:  5'- gUCcgGgUCGUCACCccguguCCCGACGUcCg -3'
miRNA:   3'- -AGuaCaAGCGGUGGuu----GGGCUGCAcG- -5'
9212 3' -53.3 NC_002512.2 + 208729 0.66 0.991106
Target:  5'- aUCggGagCGCCGCCGACCgGAg--GCa -3'
miRNA:   3'- -AGuaCaaGCGGUGGUUGGgCUgcaCG- -5'
9212 3' -53.3 NC_002512.2 + 206652 0.67 0.979733
Target:  5'- cCGUGUUCGCCgaucGCCGugCgGA--UGCa -3'
miRNA:   3'- aGUACAAGCGG----UGGUugGgCUgcACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.