miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 3' -53.3 NC_002512.2 + 72354 0.66 0.993182
Target:  5'- gUCAgcgGgUUGuCCACCAcguaGCCCGACGcGUu -3'
miRNA:   3'- -AGUa--CaAGC-GGUGGU----UGGGCUGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 133574 0.66 0.991106
Target:  5'- gUCGUGcg-GCgACCGGCCCGcccGCGgcgGCg -3'
miRNA:   3'- -AGUACaagCGgUGGUUGGGC---UGCa--CG- -5'
9212 3' -53.3 NC_002512.2 + 129549 0.66 0.991106
Target:  5'- gCGUGgccggCGcCCGCCAGuCCCGAgGcGCc -3'
miRNA:   3'- aGUACaa---GC-GGUGGUU-GGGCUgCaCG- -5'
9212 3' -53.3 NC_002512.2 + 148685 0.66 0.989896
Target:  5'- cCGUGgcccucgUCGCCGCUucGCCCGGauCGUcgGCg -3'
miRNA:   3'- aGUACa------AGCGGUGGu-UGGGCU--GCA--CG- -5'
9212 3' -53.3 NC_002512.2 + 206304 0.66 0.989896
Target:  5'- cUCGUGUUCGCU-CUcGCCCaGCG-GCc -3'
miRNA:   3'- -AGUACAAGCGGuGGuUGGGcUGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 220361 0.66 0.988561
Target:  5'- cCGUGgccgUgGCCGCCG--CCGcCGUGCu -3'
miRNA:   3'- aGUACa---AgCGGUGGUugGGCuGCACG- -5'
9212 3' -53.3 NC_002512.2 + 215403 0.66 0.988561
Target:  5'- cCAUGUUCGCCcuGCCcuGGCCCaAgG-GCg -3'
miRNA:   3'- aGUACAAGCGG--UGG--UUGGGcUgCaCG- -5'
9212 3' -53.3 NC_002512.2 + 185349 0.66 0.988561
Target:  5'- -gGUGgcCGCCGCCAucGCCguCGAC-UGCg -3'
miRNA:   3'- agUACaaGCGGUGGU--UGG--GCUGcACG- -5'
9212 3' -53.3 NC_002512.2 + 172929 0.66 0.988561
Target:  5'- cCAaGcUCGCCACCuucgccGCCUcgGugGUGCu -3'
miRNA:   3'- aGUaCaAGCGGUGGu-----UGGG--CugCACG- -5'
9212 3' -53.3 NC_002512.2 + 143164 0.66 0.991106
Target:  5'- gUCcgGUUgGCCGCCcuCUCGuaGUGCg -3'
miRNA:   3'- -AGuaCAAgCGGUGGuuGGGCugCACG- -5'
9212 3' -53.3 NC_002512.2 + 169000 0.66 0.991106
Target:  5'- gCGg--UCGCgCGCCGGCUCGGCGauccggGCg -3'
miRNA:   3'- aGUacaAGCG-GUGGUUGGGCUGCa-----CG- -5'
9212 3' -53.3 NC_002512.2 + 208729 0.66 0.991106
Target:  5'- aUCggGagCGCCGCCGACCgGAg--GCa -3'
miRNA:   3'- -AGuaCaaGCGGUGGUUGGgCUgcaCG- -5'
9212 3' -53.3 NC_002512.2 + 113647 0.66 0.993182
Target:  5'- gUCGUaGUuggCGCgGCCGGCCgCGAgGgUGCg -3'
miRNA:   3'- -AGUA-CAa--GCGgUGGUUGG-GCUgC-ACG- -5'
9212 3' -53.3 NC_002512.2 + 76168 0.66 0.993182
Target:  5'- aCAg---CGCCGugagacCCGACCagGACGUGCu -3'
miRNA:   3'- aGUacaaGCGGU------GGUUGGg-CUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 210527 0.66 0.993182
Target:  5'- -------gGCCGCCGAgccCCCGACGguccgGCa -3'
miRNA:   3'- aguacaagCGGUGGUU---GGGCUGCa----CG- -5'
9212 3' -53.3 NC_002512.2 + 106267 0.66 0.993182
Target:  5'- -gGUGaggUC-CCACCu-CCgGACGUGCu -3'
miRNA:   3'- agUACa--AGcGGUGGuuGGgCUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 90892 0.66 0.993182
Target:  5'- --cUGUUCcCCACCGACCUGuCGaUGg -3'
miRNA:   3'- aguACAAGcGGUGGUUGGGCuGC-ACg -5'
9212 3' -53.3 NC_002512.2 + 163952 0.66 0.993088
Target:  5'- aCGUGUUcaagaaCGUCACCAACCUGAaggacauCGaGCu -3'
miRNA:   3'- aGUACAA------GCGGUGGUUGGGCU-------GCaCG- -5'
9212 3' -53.3 NC_002512.2 + 195216 0.66 0.992199
Target:  5'- aUCGUGUccgaugugUCGUCGCCcgcgauguCCCGACGaaGCc -3'
miRNA:   3'- -AGUACA--------AGCGGUGGuu------GGGCUGCa-CG- -5'
9212 3' -53.3 NC_002512.2 + 142782 0.66 0.992199
Target:  5'- -gAUGUUcCGCCACCucCCCaGcACGUcGCc -3'
miRNA:   3'- agUACAA-GCGGUGGuuGGG-C-UGCA-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.