miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 3' -53.3 NC_002512.2 + 3486 0.72 0.874692
Target:  5'- cCAUcgUCGCCGCCGACuCCuGCGUcGCa -3'
miRNA:   3'- aGUAcaAGCGGUGGUUG-GGcUGCA-CG- -5'
9212 3' -53.3 NC_002512.2 + 6084 0.67 0.977482
Target:  5'- gUCccGgcggUCGCCGCCGAcgucCCCGGCGa-- -3'
miRNA:   3'- -AGuaCa---AGCGGUGGUU----GGGCUGCacg -5'
9212 3' -53.3 NC_002512.2 + 6181 0.66 0.993182
Target:  5'- cCGUGcgaGUCGCCGGCCagGACGaUGCc -3'
miRNA:   3'- aGUACaagCGGUGGUUGGg-CUGC-ACG- -5'
9212 3' -53.3 NC_002512.2 + 10444 0.68 0.972438
Target:  5'- --uUGUUCGUCACCGuuUCCGAuagcCGUGUc -3'
miRNA:   3'- aguACAAGCGGUGGUu-GGGCU----GCACG- -5'
9212 3' -53.3 NC_002512.2 + 10465 0.67 0.985484
Target:  5'- ---aGgcCGCCGCCGcCCCGgGCGUGg -3'
miRNA:   3'- aguaCaaGCGGUGGUuGGGC-UGCACg -5'
9212 3' -53.3 NC_002512.2 + 10674 0.75 0.699166
Target:  5'- -----cUCGCCgagGCCGGCCCGGCaGUGCa -3'
miRNA:   3'- aguacaAGCGG---UGGUUGGGCUG-CACG- -5'
9212 3' -53.3 NC_002512.2 + 12520 0.69 0.959995
Target:  5'- aCGUGcaccagGCCGCCAugCUGAacuCGUGCg -3'
miRNA:   3'- aGUACaag---CGGUGGUugGGCU---GCACG- -5'
9212 3' -53.3 NC_002512.2 + 13389 0.67 0.983726
Target:  5'- ---gGUUCGuCCGCU-ACCUGACGcGCu -3'
miRNA:   3'- aguaCAAGC-GGUGGuUGGGCUGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 16239 0.67 0.977482
Target:  5'- gUCAUcGUcgUCGUCGCCGucGCCCG-CG-GCg -3'
miRNA:   3'- -AGUA-CA--AGCGGUGGU--UGGGCuGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 16522 0.66 0.992199
Target:  5'- gCAcUG-UCGCCGCCAGCgCgGGCGUc- -3'
miRNA:   3'- aGU-ACaAGCGGUGGUUG-GgCUGCAcg -5'
9212 3' -53.3 NC_002512.2 + 16667 0.66 0.992199
Target:  5'- ---cGUUgGCgGCCAcgACCCGGCG-GUc -3'
miRNA:   3'- aguaCAAgCGgUGGU--UGGGCUGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 16797 0.66 0.988135
Target:  5'- gUCGUccUCGCCGCCGacgaagagcacguaGCCCG-CGggGCu -3'
miRNA:   3'- -AGUAcaAGCGGUGGU--------------UGGGCuGCa-CG- -5'
9212 3' -53.3 NC_002512.2 + 17382 0.69 0.95251
Target:  5'- aUCGUGgucCGCguCCAGCCCGAgGUc- -3'
miRNA:   3'- -AGUACaa-GCGguGGUUGGGCUgCAcg -5'
9212 3' -53.3 NC_002512.2 + 18370 0.67 0.985484
Target:  5'- aCAUGagaUCGCgGCCGAUgUGGCG-GCa -3'
miRNA:   3'- aGUACa--AGCGgUGGUUGgGCUGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 19065 0.66 0.988561
Target:  5'- cCGUG-UC-CCACCGgagcgcgaGCCCGAUGaUGCc -3'
miRNA:   3'- aGUACaAGcGGUGGU--------UGGGCUGC-ACG- -5'
9212 3' -53.3 NC_002512.2 + 20635 0.7 0.919199
Target:  5'- gUCcgGUUCGCCgaGCgGGCCCGGgacaggagcuCGUGUu -3'
miRNA:   3'- -AGuaCAAGCGG--UGgUUGGGCU----------GCACG- -5'
9212 3' -53.3 NC_002512.2 + 20722 0.72 0.83655
Target:  5'- aUCuUGcgCGCCguGCCGACgaCGACGUGCu -3'
miRNA:   3'- -AGuACaaGCGG--UGGUUGg-GCUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 21912 0.66 0.993182
Target:  5'- aCGUcucgUCGCCGCUAcggaggGCgaCGACGUGCc -3'
miRNA:   3'- aGUAca--AGCGGUGGU------UGg-GCUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 22756 0.66 0.991106
Target:  5'- aUCGUGUgccaGUacaACCAgcugguGCCCGACGagcUGCg -3'
miRNA:   3'- -AGUACAag--CGg--UGGU------UGGGCUGC---ACG- -5'
9212 3' -53.3 NC_002512.2 + 23049 0.66 0.987093
Target:  5'- aUCGUGaa-GCUG--GACCUGACGUGCa -3'
miRNA:   3'- -AGUACaagCGGUggUUGGGCUGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.