miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 3' -53.3 NC_002512.2 + 23544 1.12 0.00575
Target:  5'- aUCAUGUUCGCCACCAACCCGACGUGCc -3'
miRNA:   3'- -AGUACAAGCGGUGGUUGGGCUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 184310 0.8 0.46347
Target:  5'- gUCAUGagCGUgGCCAGCUgCGACGUGCg -3'
miRNA:   3'- -AGUACaaGCGgUGGUUGG-GCUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 193030 0.76 0.639124
Target:  5'- gCAaGUaCGCCuAUCGGCCCGACGUGUc -3'
miRNA:   3'- aGUaCAaGCGG-UGGUUGGGCUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 104262 0.76 0.668275
Target:  5'- gUCGUGUguggUCGCCGCCGGCgucuuucucgcguCCGGCG-GCg -3'
miRNA:   3'- -AGUACA----AGCGGUGGUUG-------------GGCUGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 10674 0.75 0.699166
Target:  5'- -----cUCGCCgagGCCGGCCCGGCaGUGCa -3'
miRNA:   3'- aguacaAGCGG---UGGUUGGGCUG-CACG- -5'
9212 3' -53.3 NC_002512.2 + 88585 0.75 0.709032
Target:  5'- gUCGUcgUCGCCGCCgGugCCGcCGUGCg -3'
miRNA:   3'- -AGUAcaAGCGGUGG-UugGGCuGCACG- -5'
9212 3' -53.3 NC_002512.2 + 148236 0.74 0.784944
Target:  5'- -gGUGUUCGCCAUCAgcaacgcgccgaGCCUGgACGUGg -3'
miRNA:   3'- agUACAAGCGGUGGU------------UGGGC-UGCACg -5'
9212 3' -53.3 NC_002512.2 + 186577 0.73 0.793925
Target:  5'- gUC-UGUUCGCCACCGGccgccucuacCCCGACcUGUu -3'
miRNA:   3'- -AGuACAAGCGGUGGUU----------GGGCUGcACG- -5'
9212 3' -53.3 NC_002512.2 + 132277 0.73 0.793925
Target:  5'- aCAUGgcggCGCaCACCGagaacacggACCCGGCGUGg -3'
miRNA:   3'- aGUACaa--GCG-GUGGU---------UGGGCUGCACg -5'
9212 3' -53.3 NC_002512.2 + 92155 0.73 0.802765
Target:  5'- gCGUGcaggaccUGCCgACCAACCCGACG-GCg -3'
miRNA:   3'- aGUACaa-----GCGG-UGGUUGGGCUGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 179857 0.73 0.802765
Target:  5'- gCGUGUgcgCGcCCACCGucACgaCGACGUGCa -3'
miRNA:   3'- aGUACAa--GC-GGUGGU--UGg-GCUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 130139 0.73 0.819988
Target:  5'- -gGUGgugUCGCgGCCGcgggGCCCGGCG-GCg -3'
miRNA:   3'- agUACa--AGCGgUGGU----UGGGCUGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 115695 0.73 0.828356
Target:  5'- cUCAUG---GCCGCCgGGCCCGACGccgGCg -3'
miRNA:   3'- -AGUACaagCGGUGG-UUGGGCUGCa--CG- -5'
9212 3' -53.3 NC_002512.2 + 20722 0.72 0.83655
Target:  5'- aUCuUGcgCGCCguGCCGACgaCGACGUGCu -3'
miRNA:   3'- -AGuACaaGCGG--UGGUUGg-GCUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 28534 0.72 0.844565
Target:  5'- gUCggGUcCGCCGCC-GCCCGAUGUcgGCc -3'
miRNA:   3'- -AGuaCAaGCGGUGGuUGGGCUGCA--CG- -5'
9212 3' -53.3 NC_002512.2 + 120889 0.72 0.844565
Target:  5'- ------aCGCCGCCGGCgCCGACGaGCa -3'
miRNA:   3'- aguacaaGCGGUGGUUG-GGCUGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 60450 0.72 0.857758
Target:  5'- -gGUGUgCGCCGCCAACauCCGcgcgacggacacuaGCGUGCu -3'
miRNA:   3'- agUACAaGCGGUGGUUG--GGC--------------UGCACG- -5'
9212 3' -53.3 NC_002512.2 + 3486 0.72 0.874692
Target:  5'- cCAUcgUCGCCGCCGACuCCuGCGUcGCa -3'
miRNA:   3'- aGUAcaAGCGGUGGUUG-GGcUGCA-CG- -5'
9212 3' -53.3 NC_002512.2 + 91826 0.71 0.881712
Target:  5'- cUCGUGUUCGUCACCcgGAUCCGGuCccGCa -3'
miRNA:   3'- -AGUACAAGCGGUGG--UUGGGCU-GcaCG- -5'
9212 3' -53.3 NC_002512.2 + 175436 0.71 0.881712
Target:  5'- uUCAgGUUCGCCACCGugCCGGu---- -3'
miRNA:   3'- -AGUaCAAGCGGUGGUugGGCUgcacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.