miRNA display CGI


Results 21 - 40 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 3' -53.3 NC_002512.2 + 123695 0.71 0.895104
Target:  5'- -gAUGaUCGCCaACCcgaagGACCCGGCGUcGCc -3'
miRNA:   3'- agUACaAGCGG-UGG-----UUGGGCUGCA-CG- -5'
9212 3' -53.3 NC_002512.2 + 44385 0.71 0.895104
Target:  5'- ---aGgcCcCCGCgCAGCCCGGCGUGCg -3'
miRNA:   3'- aguaCaaGcGGUG-GUUGGGCUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 219337 0.71 0.901468
Target:  5'- gCGUGgccCGCCGgCuGCCCGGCGUccGCg -3'
miRNA:   3'- aGUACaa-GCGGUgGuUGGGCUGCA--CG- -5'
9212 3' -53.3 NC_002512.2 + 97497 0.71 0.905789
Target:  5'- -gGUGUUCGCgGCCAuggcgguguucgggAUCgUGGCGUGCg -3'
miRNA:   3'- agUACAAGCGgUGGU--------------UGG-GCUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 173692 0.7 0.912937
Target:  5'- aCA-GUUCGUCACCGccguccugggacuGCCCGcgacCGUGCu -3'
miRNA:   3'- aGUaCAAGCGGUGGU-------------UGGGCu---GCACG- -5'
9212 3' -53.3 NC_002512.2 + 187881 0.7 0.913518
Target:  5'- gUC-UGUaCGUCACCGACCgGACGUuCa -3'
miRNA:   3'- -AGuACAaGCGGUGGUUGGgCUGCAcG- -5'
9212 3' -53.3 NC_002512.2 + 20635 0.7 0.919199
Target:  5'- gUCcgGUUCGCCgaGCgGGCCCGGgacaggagcuCGUGUu -3'
miRNA:   3'- -AGuaCAAGCGG--UGgUUGGGCU----------GCACG- -5'
9212 3' -53.3 NC_002512.2 + 114191 0.7 0.924114
Target:  5'- aUCuUGUUCuCCACCGugcuguaggcccgGCCCGAgcccaCGUGCa -3'
miRNA:   3'- -AGuACAAGcGGUGGU-------------UGGGCU-----GCACG- -5'
9212 3' -53.3 NC_002512.2 + 153364 0.7 0.929867
Target:  5'- aUCAgaacgUCaGCCGgCAACUgGACGUGCg -3'
miRNA:   3'- -AGUaca--AG-CGGUgGUUGGgCUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 211534 0.7 0.929867
Target:  5'- cUCAUGUUCGaCAgCAugUuCGGCGUGUg -3'
miRNA:   3'- -AGUACAAGCgGUgGUugG-GCUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 220647 0.7 0.934855
Target:  5'- gUCcUGUggcgcgagCGCCACCuGGCCCGccgcguCGUGCu -3'
miRNA:   3'- -AGuACAa-------GCGGUGG-UUGGGCu-----GCACG- -5'
9212 3' -53.3 NC_002512.2 + 107832 0.7 0.934855
Target:  5'- gUCGUcacaGCCGCCGACgCCGccccggGCGUGCg -3'
miRNA:   3'- -AGUAcaagCGGUGGUUG-GGC------UGCACG- -5'
9212 3' -53.3 NC_002512.2 + 123428 0.69 0.939611
Target:  5'- uUCGUGUUCGCgAUCc-CCCGACaG-GCg -3'
miRNA:   3'- -AGUACAAGCGgUGGuuGGGCUG-CaCG- -5'
9212 3' -53.3 NC_002512.2 + 223347 0.69 0.939611
Target:  5'- cUCAgGUUCGucuucuccgcCCGCCGAUCCGGCGUc- -3'
miRNA:   3'- -AGUaCAAGC----------GGUGGUUGGGCUGCAcg -5'
9212 3' -53.3 NC_002512.2 + 131206 0.69 0.939611
Target:  5'- gUCGUG--CGCgGCCAggcGCUCGACGUcGCg -3'
miRNA:   3'- -AGUACaaGCGgUGGU---UGGGCUGCA-CG- -5'
9212 3' -53.3 NC_002512.2 + 150146 0.69 0.943695
Target:  5'- cUCGUGUcggCGuCCGCCAGCCCGuccuCGcucucccUGCc -3'
miRNA:   3'- -AGUACAa--GC-GGUGGUUGGGCu---GC-------ACG- -5'
9212 3' -53.3 NC_002512.2 + 129122 0.69 0.948436
Target:  5'- -gGUGcagCGCuccgagCACCAGCUCGGCGUGUu -3'
miRNA:   3'- agUACaa-GCG------GUGGUUGGGCUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 156383 0.69 0.948436
Target:  5'- --cUGUucuUCGCCAaCAACuCCGugGUGUa -3'
miRNA:   3'- aguACA---AGCGGUgGUUG-GGCugCACG- -5'
9212 3' -53.3 NC_002512.2 + 105136 0.69 0.948436
Target:  5'- -----gUCGUCGCCGcACCCGACGgacGCc -3'
miRNA:   3'- aguacaAGCGGUGGU-UGGGCUGCa--CG- -5'
9212 3' -53.3 NC_002512.2 + 31291 0.69 0.948436
Target:  5'- aCGUGacgggccagaucUUCGCCAUCAACUCGAgGaUGUa -3'
miRNA:   3'- aGUAC------------AAGCGGUGGUUGGGCUgC-ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.