miRNA display CGI


Results 21 - 40 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 3' -53.3 NC_002512.2 + 41249 0.66 0.992199
Target:  5'- ------cCGCCGCCGgcgcccuugcgGCCCGAgcgcuCGUGCu -3'
miRNA:   3'- aguacaaGCGGUGGU-----------UGGGCU-----GCACG- -5'
9212 3' -53.3 NC_002512.2 + 195216 0.66 0.992199
Target:  5'- aUCGUGUccgaugugUCGUCGCCcgcgauguCCCGACGaaGCc -3'
miRNA:   3'- -AGUACA--------AGCGGUGGuu------GGGCUGCa-CG- -5'
9212 3' -53.3 NC_002512.2 + 142782 0.66 0.992199
Target:  5'- -gAUGUUcCGCCACCucCCCaGcACGUcGCc -3'
miRNA:   3'- agUACAA-GCGGUGGuuGGG-C-UGCA-CG- -5'
9212 3' -53.3 NC_002512.2 + 143164 0.66 0.991106
Target:  5'- gUCcgGUUgGCCGCCcuCUCGuaGUGCg -3'
miRNA:   3'- -AGuaCAAgCGGUGGuuGGGCugCACG- -5'
9212 3' -53.3 NC_002512.2 + 27028 0.66 0.991106
Target:  5'- aUCAUGa--GCUACgaCAGCUaCGGCGUGCu -3'
miRNA:   3'- -AGUACaagCGGUG--GUUGG-GCUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 169000 0.66 0.991106
Target:  5'- gCGg--UCGCgCGCCGGCUCGGCGauccggGCg -3'
miRNA:   3'- aGUacaAGCG-GUGGUUGGGCUGCa-----CG- -5'
9212 3' -53.3 NC_002512.2 + 107479 0.66 0.991106
Target:  5'- uUCAUcucgUCGCCgcgACCGGCCCGcaGCGgucucUGCg -3'
miRNA:   3'- -AGUAca--AGCGG---UGGUUGGGC--UGC-----ACG- -5'
9212 3' -53.3 NC_002512.2 + 133574 0.66 0.991106
Target:  5'- gUCGUGcg-GCgACCGGCCCGcccGCGgcgGCg -3'
miRNA:   3'- -AGUACaagCGgUGGUUGGGC---UGCa--CG- -5'
9212 3' -53.3 NC_002512.2 + 129549 0.66 0.991106
Target:  5'- gCGUGgccggCGcCCGCCAGuCCCGAgGcGCc -3'
miRNA:   3'- aGUACaa---GC-GGUGGUU-GGGCUgCaCG- -5'
9212 3' -53.3 NC_002512.2 + 196702 0.66 0.991106
Target:  5'- ------cCGuCCGCCAGCCCGACcG-GCu -3'
miRNA:   3'- aguacaaGC-GGUGGUUGGGCUG-CaCG- -5'
9212 3' -53.3 NC_002512.2 + 76825 0.66 0.991106
Target:  5'- -----cUCGaCCGCCGACCCGAcCGggaccGCu -3'
miRNA:   3'- aguacaAGC-GGUGGUUGGGCU-GCa----CG- -5'
9212 3' -53.3 NC_002512.2 + 84785 0.66 0.991106
Target:  5'- cCGUGUcgGCCGgCAGCCgCGACGccucGCg -3'
miRNA:   3'- aGUACAagCGGUgGUUGG-GCUGCa---CG- -5'
9212 3' -53.3 NC_002512.2 + 22756 0.66 0.991106
Target:  5'- aUCGUGUgccaGUacaACCAgcugguGCCCGACGagcUGCg -3'
miRNA:   3'- -AGUACAag--CGg--UGGU------UGGGCUGC---ACG- -5'
9212 3' -53.3 NC_002512.2 + 208729 0.66 0.991106
Target:  5'- aUCggGagCGCCGCCGACCgGAg--GCa -3'
miRNA:   3'- -AGuaCaaGCGGUGGUUGGgCUgcaCG- -5'
9212 3' -53.3 NC_002512.2 + 148685 0.66 0.989896
Target:  5'- cCGUGgcccucgUCGCCGCUucGCCCGGauCGUcgGCg -3'
miRNA:   3'- aGUACa------AGCGGUGGu-UGGGCU--GCA--CG- -5'
9212 3' -53.3 NC_002512.2 + 206304 0.66 0.989896
Target:  5'- cUCGUGUUCGCU-CUcGCCCaGCG-GCc -3'
miRNA:   3'- -AGUACAAGCGGuGGuUGGGcUGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 72714 0.66 0.989896
Target:  5'- aUCGUcg-CGCCGCCGcccacgccGCCCGGCccGCc -3'
miRNA:   3'- -AGUAcaaGCGGUGGU--------UGGGCUGcaCG- -5'
9212 3' -53.3 NC_002512.2 + 56264 0.66 0.989896
Target:  5'- ---gGUUCGCCGCCG---CGGCGgagGCg -3'
miRNA:   3'- aguaCAAGCGGUGGUuggGCUGCa--CG- -5'
9212 3' -53.3 NC_002512.2 + 92738 0.66 0.988975
Target:  5'- -gAUGUUCGUcauggaggccaggcuCACCGAUacgucguuguagaUCGGCGUGCg -3'
miRNA:   3'- agUACAAGCG---------------GUGGUUG-------------GGCUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 105378 0.66 0.988561
Target:  5'- ---gGUUCagacCCAUCGACCCGGCGacGCu -3'
miRNA:   3'- aguaCAAGc---GGUGGUUGGGCUGCa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.