Results 21 - 40 of 175 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9212 | 3' | -53.3 | NC_002512.2 | + | 126023 | 0.66 | 0.987093 |
Target: 5'- ---cGUUCGUCAggcCCAGCuCCGG-GUGCa -3' miRNA: 3'- aguaCAAGCGGU---GGUUG-GGCUgCACG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 169000 | 0.66 | 0.991106 |
Target: 5'- gCGg--UCGCgCGCCGGCUCGGCGauccggGCg -3' miRNA: 3'- aGUacaAGCG-GUGGUUGGGCUGCa-----CG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 113647 | 0.66 | 0.993182 |
Target: 5'- gUCGUaGUuggCGCgGCCGGCCgCGAgGgUGCg -3' miRNA: 3'- -AGUA-CAa--GCGgUGGUUGG-GCUgC-ACG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 76168 | 0.66 | 0.993182 |
Target: 5'- aCAg---CGCCGugagacCCGACCagGACGUGCu -3' miRNA: 3'- aGUacaaGCGGU------GGUUGGg-CUGCACG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 210527 | 0.66 | 0.993182 |
Target: 5'- -------gGCCGCCGAgccCCCGACGguccgGCa -3' miRNA: 3'- aguacaagCGGUGGUU---GGGCUGCa----CG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 106267 | 0.66 | 0.993182 |
Target: 5'- -gGUGaggUC-CCACCu-CCgGACGUGCu -3' miRNA: 3'- agUACa--AGcGGUGGuuGGgCUGCACG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 90892 | 0.66 | 0.993182 |
Target: 5'- --cUGUUCcCCACCGACCUGuCGaUGg -3' miRNA: 3'- aguACAAGcGGUGGUUGGGCuGC-ACg -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 163952 | 0.66 | 0.993088 |
Target: 5'- aCGUGUUcaagaaCGUCACCAACCUGAaggacauCGaGCu -3' miRNA: 3'- aGUACAA------GCGGUGGUUGGGCU-------GCaCG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 195216 | 0.66 | 0.992199 |
Target: 5'- aUCGUGUccgaugugUCGUCGCCcgcgauguCCCGACGaaGCc -3' miRNA: 3'- -AGUACA--------AGCGGUGGuu------GGGCUGCa-CG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 142782 | 0.66 | 0.992199 |
Target: 5'- -gAUGUUcCGCCACCucCCCaGcACGUcGCc -3' miRNA: 3'- agUACAA-GCGGUGGuuGGG-C-UGCA-CG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 208729 | 0.66 | 0.991106 |
Target: 5'- aUCggGagCGCCGCCGACCgGAg--GCa -3' miRNA: 3'- -AGuaCaaGCGGUGGUUGGgCUgcaCG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 205040 | 0.66 | 0.993182 |
Target: 5'- ---cGUcCGCCGCCGACCgGccGCGgGCc -3' miRNA: 3'- aguaCAaGCGGUGGUUGGgC--UGCaCG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 143164 | 0.66 | 0.991106 |
Target: 5'- gUCcgGUUgGCCGCCcuCUCGuaGUGCg -3' miRNA: 3'- -AGuaCAAgCGGUGGuuGGGCugCACG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 133574 | 0.66 | 0.991106 |
Target: 5'- gUCGUGcg-GCgACCGGCCCGcccGCGgcgGCg -3' miRNA: 3'- -AGUACaagCGgUGGUUGGGC---UGCa--CG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 129549 | 0.66 | 0.991106 |
Target: 5'- gCGUGgccggCGcCCGCCAGuCCCGAgGcGCc -3' miRNA: 3'- aGUACaa---GC-GGUGGUU-GGGCUgCaCG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 148685 | 0.66 | 0.989896 |
Target: 5'- cCGUGgcccucgUCGCCGCUucGCCCGGauCGUcgGCg -3' miRNA: 3'- aGUACa------AGCGGUGGu-UGGGCU--GCA--CG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 206304 | 0.66 | 0.989896 |
Target: 5'- cUCGUGUUCGCU-CUcGCCCaGCG-GCc -3' miRNA: 3'- -AGUACAAGCGGuGGuUGGGcUGCaCG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 220361 | 0.66 | 0.988561 |
Target: 5'- cCGUGgccgUgGCCGCCG--CCGcCGUGCu -3' miRNA: 3'- aGUACa---AgCGGUGGUugGGCuGCACG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 215403 | 0.66 | 0.988561 |
Target: 5'- cCAUGUUCGCCcuGCCcuGGCCCaAgG-GCg -3' miRNA: 3'- aGUACAAGCGG--UGG--UUGGGcUgCaCG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 185349 | 0.66 | 0.988561 |
Target: 5'- -gGUGgcCGCCGCCAucGCCguCGAC-UGCg -3' miRNA: 3'- agUACaaGCGGUGGU--UGG--GCUGcACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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