miRNA display CGI


Results 41 - 60 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 3' -53.3 NC_002512.2 + 105177 0.66 0.988561
Target:  5'- aCAgGUgcacgCGCC-CCAGgaCGGCGUGCg -3'
miRNA:   3'- aGUaCAa----GCGGuGGUUggGCUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 220361 0.66 0.988561
Target:  5'- cCGUGgccgUgGCCGCCG--CCGcCGUGCu -3'
miRNA:   3'- aGUACa---AgCGGUGGUugGGCuGCACG- -5'
9212 3' -53.3 NC_002512.2 + 215403 0.66 0.988561
Target:  5'- cCAUGUUCGCCcuGCCcuGGCCCaAgG-GCg -3'
miRNA:   3'- aGUACAAGCGG--UGG--UUGGGcUgCaCG- -5'
9212 3' -53.3 NC_002512.2 + 91703 0.66 0.988561
Target:  5'- -gAUGUcCGCgaugcaCACgCAGCCCGGCGggUGCg -3'
miRNA:   3'- agUACAaGCG------GUG-GUUGGGCUGC--ACG- -5'
9212 3' -53.3 NC_002512.2 + 185349 0.66 0.988561
Target:  5'- -gGUGgcCGCCGCCAucGCCguCGAC-UGCg -3'
miRNA:   3'- agUACaaGCGGUGGU--UGG--GCUGcACG- -5'
9212 3' -53.3 NC_002512.2 + 172929 0.66 0.988561
Target:  5'- cCAaGcUCGCCACCuucgccGCCUcgGugGUGCu -3'
miRNA:   3'- aGUaCaAGCGGUGGu-----UGGG--CugCACG- -5'
9212 3' -53.3 NC_002512.2 + 166647 0.66 0.988561
Target:  5'- aUCAgGgg-GCCACCGuguugcGCCCGA-GUGCg -3'
miRNA:   3'- -AGUaCaagCGGUGGU------UGGGCUgCACG- -5'
9212 3' -53.3 NC_002512.2 + 113999 0.66 0.988561
Target:  5'- aCAUGguccCGCCGCCGucggcCCCGcaGCG-GCa -3'
miRNA:   3'- aGUACaa--GCGGUGGUu----GGGC--UGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 19065 0.66 0.988561
Target:  5'- cCGUG-UC-CCACCGgagcgcgaGCCCGAUGaUGCc -3'
miRNA:   3'- aGUACaAGcGGUGGU--------UGGGCUGC-ACG- -5'
9212 3' -53.3 NC_002512.2 + 47899 0.66 0.988561
Target:  5'- ---aGgaCGCCGCC-ACCU-ACGUGCg -3'
miRNA:   3'- aguaCaaGCGGUGGuUGGGcUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 151876 0.66 0.988561
Target:  5'- cUCGUGggCGCCGgCGAUCCG-CGg-- -3'
miRNA:   3'- -AGUACaaGCGGUgGUUGGGCuGCacg -5'
9212 3' -53.3 NC_002512.2 + 47666 0.66 0.98842
Target:  5'- aCGUGg-CGCCGCCGaacgugcuguuccACCCGGgG-GCg -3'
miRNA:   3'- aGUACaaGCGGUGGU-------------UGGGCUgCaCG- -5'
9212 3' -53.3 NC_002512.2 + 16797 0.66 0.988135
Target:  5'- gUCGUccUCGCCGCCGacgaagagcacguaGCCCG-CGggGCu -3'
miRNA:   3'- -AGUAcaAGCGGUGGU--------------UGGGCuGCa-CG- -5'
9212 3' -53.3 NC_002512.2 + 218919 0.66 0.987093
Target:  5'- cUCGUGc-CGCUGCCcuGGCCCGAgG-GCg -3'
miRNA:   3'- -AGUACaaGCGGUGG--UUGGGCUgCaCG- -5'
9212 3' -53.3 NC_002512.2 + 126023 0.66 0.987093
Target:  5'- ---cGUUCGUCAggcCCAGCuCCGG-GUGCa -3'
miRNA:   3'- aguaCAAGCGGU---GGUUG-GGCUgCACG- -5'
9212 3' -53.3 NC_002512.2 + 204956 0.66 0.987093
Target:  5'- cUCGg--UCGCUgcggGCCgAGCCCGACGccGCg -3'
miRNA:   3'- -AGUacaAGCGG----UGG-UUGGGCUGCa-CG- -5'
9212 3' -53.3 NC_002512.2 + 206513 0.66 0.987093
Target:  5'- aCAUGUUCuCCACCGugauggucACCU--CGUGCu -3'
miRNA:   3'- aGUACAAGcGGUGGU--------UGGGcuGCACG- -5'
9212 3' -53.3 NC_002512.2 + 184974 0.66 0.987093
Target:  5'- ---cGUcCGCCGCgCGGCCguCGACGUGg -3'
miRNA:   3'- aguaCAaGCGGUG-GUUGG--GCUGCACg -5'
9212 3' -53.3 NC_002512.2 + 136990 0.66 0.987093
Target:  5'- --cUGUUCGCCucgACCAGCCUccagGAgGUGa -3'
miRNA:   3'- aguACAAGCGG---UGGUUGGG----CUgCACg -5'
9212 3' -53.3 NC_002512.2 + 201610 0.66 0.987093
Target:  5'- ---aGUUCuCCGCCAGCgCCGAgCGguagGCg -3'
miRNA:   3'- aguaCAAGcGGUGGUUG-GGCU-GCa---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.