miRNA display CGI


Results 61 - 80 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 5' -59.5 NC_002512.2 + 108427 0.66 0.829926
Target:  5'- cGGCgGC-GGGCGcGGGGCGGACc--- -3'
miRNA:   3'- aCCGgCGaCCCGC-UCUCGCUUGugcu -5'
9212 5' -59.5 NC_002512.2 + 158981 0.66 0.829926
Target:  5'- cGGCgGCcacGGCG-GGGCGGAgGCGGc -3'
miRNA:   3'- aCCGgCGac-CCGCuCUCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 103018 0.66 0.828326
Target:  5'- aGGCCGCguaguccaccacGGGCucguagaagaccGGGGGCagGAGCGCGGg -3'
miRNA:   3'- aCCGGCGa-----------CCCG------------CUCUCG--CUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 98774 0.67 0.825106
Target:  5'- cUGGCCGUcgGGGgGcagcuguucaaugucAGAGCGugUACGAc -3'
miRNA:   3'- -ACCGGCGa-CCCgC---------------UCUCGCuuGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 105870 0.67 0.82186
Target:  5'- gUGGCCcagGGGC-AGcGCGAACACGc -3'
miRNA:   3'- -ACCGGcgaCCCGcUCuCGCUUGUGCu -5'
9212 5' -59.5 NC_002512.2 + 127487 0.67 0.82186
Target:  5'- gUGGCCGCcgcccucGGGCGGGAGCa------- -3'
miRNA:   3'- -ACCGGCGa------CCCGCUCUCGcuugugcu -5'
9212 5' -59.5 NC_002512.2 + 111289 0.67 0.82186
Target:  5'- cGGCCGCcgcgGGGaGAGGGCcgccGAuCGCGGc -3'
miRNA:   3'- aCCGGCGa---CCCgCUCUCG----CUuGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 226235 0.67 0.82186
Target:  5'- cGGCCGCgaggGGGCcGGAG-GAGgAgGAg -3'
miRNA:   3'- aCCGGCGa---CCCGcUCUCgCUUgUgCU- -5'
9212 5' -59.5 NC_002512.2 + 219837 0.67 0.821045
Target:  5'- cGGUCGggGGGUccggcccGGGGGCGGAuCGCGGa -3'
miRNA:   3'- aCCGGCgaCCCG-------CUCUCGCUU-GUGCU- -5'
9212 5' -59.5 NC_002512.2 + 175260 0.67 0.813637
Target:  5'- gGGCCGCgcucGGCGGGuagcuGGCGGcCGCGu -3'
miRNA:   3'- aCCGGCGac--CCGCUC-----UCGCUuGUGCu -5'
9212 5' -59.5 NC_002512.2 + 155871 0.67 0.813637
Target:  5'- cGGCCacGCUGuucguccccgacGGCGGGcGCGGGgACGAg -3'
miRNA:   3'- aCCGG--CGAC------------CCGCUCuCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 202774 0.67 0.813637
Target:  5'- gUGGaaGUUGGGCaccacccGAGCGAGCAUGc -3'
miRNA:   3'- -ACCggCGACCCGcu-----CUCGCUUGUGCu -5'
9212 5' -59.5 NC_002512.2 + 31672 0.67 0.813637
Target:  5'- cGGCCGUgGuGGCGgacGGGGaggaGGACGCGGa -3'
miRNA:   3'- aCCGGCGaC-CCGC---UCUCg---CUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 93051 0.67 0.812806
Target:  5'- cGGCUGCUGccccaGGCgcuguaccgggacGAGAGCGAgagccGCGCGu -3'
miRNA:   3'- aCCGGCGAC-----CCG-------------CUCUCGCU-----UGUGCu -5'
9212 5' -59.5 NC_002512.2 + 227531 0.67 0.805264
Target:  5'- cGGCgGCggacgggGGGagGAGGGCGggUccGCGAc -3'
miRNA:   3'- aCCGgCGa------CCCg-CUCUCGCuuG--UGCU- -5'
9212 5' -59.5 NC_002512.2 + 48217 0.67 0.805264
Target:  5'- cGGCCGCgGGGCGcGAcuaccuGUaccgGGACGCGGc -3'
miRNA:   3'- aCCGGCGaCCCGCuCU------CG----CUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 228966 0.67 0.805264
Target:  5'- gGGgCGgaGGGCGGGAGacgGAGCA-GAg -3'
miRNA:   3'- aCCgGCgaCCCGCUCUCg--CUUGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 105204 0.67 0.805264
Target:  5'- aGGCCGUguaGaGGUccGAGCuGAGCGCGAa -3'
miRNA:   3'- aCCGGCGa--C-CCGcuCUCG-CUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 45264 0.67 0.805264
Target:  5'- cGGCCGCc-GGCGGG-GCGcuCGCGc -3'
miRNA:   3'- aCCGGCGacCCGCUCuCGCuuGUGCu -5'
9212 5' -59.5 NC_002512.2 + 126657 0.67 0.805264
Target:  5'- cGGCCGUcgacGGGCGGcGAcGCGAGC-CGc -3'
miRNA:   3'- aCCGGCGa---CCCGCU-CU-CGCUUGuGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.