miRNA display CGI


Results 41 - 60 of 233 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 5' -59.5 NC_002512.2 + 126334 0.66 0.845563
Target:  5'- aGGCCGCcgcguccGGGac-GGGCGcGCACGAc -3'
miRNA:   3'- aCCGGCGa------CCCgcuCUCGCuUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 92672 0.66 0.845563
Target:  5'- cGGCCGCccgcgccGGGCGcgccgcccaccGGGCGGAC-CGAc -3'
miRNA:   3'- aCCGGCGa------CCCGCu----------CUCGCUUGuGCU- -5'
9212 5' -59.5 NC_002512.2 + 91935 0.66 0.844797
Target:  5'- cGGCCGacuuggucUUGGGCGcgaucgccagggcGGAGCG-GCACGu -3'
miRNA:   3'- aCCGGC--------GACCCGC-------------UCUCGCuUGUGCu -5'
9212 5' -59.5 NC_002512.2 + 91019 0.66 0.84403
Target:  5'- aGGCCcaucaGCgggauacggggacUGGuGCGGGAGCGGgugggguGCGCGAg -3'
miRNA:   3'- aCCGG-----CG-------------ACC-CGCUCUCGCU-------UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 112901 0.66 0.838611
Target:  5'- cGGCCGUcggcccgcccggacgGGGCGucGGCGGcccgguggcGCGCGAg -3'
miRNA:   3'- aCCGGCGa--------------CCCGCucUCGCU---------UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 150219 0.66 0.83783
Target:  5'- aGGCCGCcGGG-GAG-GCGAu--CGAg -3'
miRNA:   3'- aCCGGCGaCCCgCUCuCGCUuguGCU- -5'
9212 5' -59.5 NC_002512.2 + 160932 0.66 0.83783
Target:  5'- -aGUCGCUGcGGCGGuGGGgGGGuCACGAg -3'
miRNA:   3'- acCGGCGAC-CCGCU-CUCgCUU-GUGCU- -5'
9212 5' -59.5 NC_002512.2 + 100049 0.66 0.83783
Target:  5'- cGGgCGCUGagacGCGGGGGCGGcgGCGcCGAc -3'
miRNA:   3'- aCCgGCGACc---CGCUCUCGCU--UGU-GCU- -5'
9212 5' -59.5 NC_002512.2 + 229605 0.66 0.83783
Target:  5'- gGGCC-C-GGGCgGAGAGgGAGCGgGGa -3'
miRNA:   3'- aCCGGcGaCCCG-CUCUCgCUUGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 129282 0.66 0.83783
Target:  5'- gGGaCUGggggGGGgGGGAGgGAGCACGGc -3'
miRNA:   3'- aCC-GGCga--CCCgCUCUCgCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 211139 0.66 0.83783
Target:  5'- aGGCCGaggacCUGGGCGucauccAGGGCGugcuGCcCGAg -3'
miRNA:   3'- aCCGGC-----GACCCGC------UCUCGCu---UGuGCU- -5'
9212 5' -59.5 NC_002512.2 + 202 0.66 0.83783
Target:  5'- gGGCC-C-GGGCgGAGAGgGAGCGgGGa -3'
miRNA:   3'- aCCGGcGaCCCG-CUCUCgCUUGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 113660 0.66 0.83783
Target:  5'- cGGCCGgcc-GCGAGGGUGcGCGCGGg -3'
miRNA:   3'- aCCGGCgaccCGCUCUCGCuUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 115467 0.66 0.837047
Target:  5'- cGGaCCGCgUGGGagccgguCGAGA-UGAGCGCGAg -3'
miRNA:   3'- aCC-GGCG-ACCC-------GCUCUcGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 15813 0.66 0.833108
Target:  5'- aGGCCGCcgUGGGacgaGGGgucguagagguagacGGCGGugACGGg -3'
miRNA:   3'- aCCGGCG--ACCCg---CUC---------------UCGCUugUGCU- -5'
9212 5' -59.5 NC_002512.2 + 108427 0.66 0.829926
Target:  5'- cGGCgGC-GGGCGcGGGGCGGACc--- -3'
miRNA:   3'- aCCGgCGaCCCGC-UCUCGCUUGugcu -5'
9212 5' -59.5 NC_002512.2 + 204724 0.66 0.829926
Target:  5'- gGGCC-CgGGGCGGGGGgcCGGACcCGGg -3'
miRNA:   3'- aCCGGcGaCCCGCUCUC--GCUUGuGCU- -5'
9212 5' -59.5 NC_002512.2 + 158981 0.66 0.829926
Target:  5'- cGGCgGCcacGGCG-GGGCGGAgGCGGc -3'
miRNA:   3'- aCCGgCGac-CCGCuCUCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 19102 0.66 0.829926
Target:  5'- gUGGCCGUUGGcCGuG-GCGAagcGCGCGu -3'
miRNA:   3'- -ACCGGCGACCcGCuCuCGCU---UGUGCu -5'
9212 5' -59.5 NC_002512.2 + 107005 0.66 0.829926
Target:  5'- gGGCCGggGucGGcCGAGAGCcGGGCGCGc -3'
miRNA:   3'- aCCGGCgaC--CC-GCUCUCG-CUUGUGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.