miRNA display CGI


Results 61 - 80 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 5' -59.5 NC_002512.2 + 81985 0.71 0.59876
Target:  5'- gUGGCgGCggGGGCGucucgGGGGCGGuCGCGGc -3'
miRNA:   3'- -ACCGgCGa-CCCGC-----UCUCGCUuGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 82333 0.68 0.737526
Target:  5'- gGGCCGCcccggcggguagcggUGGGCGu--GCGGGgGCGGc -3'
miRNA:   3'- aCCGGCG---------------ACCCGCucuCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 82992 0.67 0.804419
Target:  5'- cGGCCGCcuccagcugcgccUGGGCcuccGGGCGGuaguggccccGCGCGAg -3'
miRNA:   3'- aCCGGCG-------------ACCCGcu--CUCGCU----------UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 85557 0.66 0.845563
Target:  5'- gGGCUcgaGgaGGcGCGGGAGCGGGaGCGGc -3'
miRNA:   3'- aCCGG---CgaCC-CGCUCUCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 86260 0.66 0.867685
Target:  5'- gGGCCGaggcGGG-GAGGGaCGAACGCc- -3'
miRNA:   3'- aCCGGCga--CCCgCUCUC-GCUUGUGcu -5'
9212 5' -59.5 NC_002512.2 + 90553 0.66 0.860496
Target:  5'- gGaGCgGgaGGaCGAGGGCGAGgGCGAc -3'
miRNA:   3'- aC-CGgCgaCCcGCUCUCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 90935 0.7 0.61822
Target:  5'- cGGgCGCgaccgGGGCGuGcGUGGGCGCGAc -3'
miRNA:   3'- aCCgGCGa----CCCGCuCuCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 91019 0.66 0.84403
Target:  5'- aGGCCcaucaGCgggauacggggacUGGuGCGGGAGCGGgugggguGCGCGAg -3'
miRNA:   3'- aCCGG-----CG-------------ACC-CGCUCUCGCU-------UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 91872 0.7 0.608482
Target:  5'- aGGCCGCcguccGGCGcGGGCGGcgGCGCGGc -3'
miRNA:   3'- aCCGGCGac---CCGCuCUCGCU--UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 91935 0.66 0.844797
Target:  5'- cGGCCGacuuggucUUGGGCGcgaucgccagggcGGAGCG-GCACGu -3'
miRNA:   3'- aCCGGC--------GACCCGC-------------UCUCGCuUGUGCu -5'
9212 5' -59.5 NC_002512.2 + 92672 0.66 0.845563
Target:  5'- cGGCCGCccgcgccGGGCGcgccgcccaccGGGCGGAC-CGAc -3'
miRNA:   3'- aCCGGCGa------CCCGCu----------CUCGCUUGuGCU- -5'
9212 5' -59.5 NC_002512.2 + 93051 0.67 0.812806
Target:  5'- cGGCUGCUGccccaGGCgcuguaccgggacGAGAGCGAgagccGCGCGu -3'
miRNA:   3'- aCCGGCGAC-----CCG-------------CUCUCGCU-----UGUGCu -5'
9212 5' -59.5 NC_002512.2 + 93386 0.7 0.61822
Target:  5'- gGGCCGCaGGGCGcGc-CGAACGCGu -3'
miRNA:   3'- aCCGGCGaCCCGCuCucGCUUGUGCu -5'
9212 5' -59.5 NC_002512.2 + 93619 0.66 0.853121
Target:  5'- cGGCCGUUGGaCGGGcGCGuGCuCGGu -3'
miRNA:   3'- aCCGGCGACCcGCUCuCGCuUGuGCU- -5'
9212 5' -59.5 NC_002512.2 + 95768 0.72 0.522269
Target:  5'- cGGCCGCcuggacggGGGCGuccGAGCGGuaggcgccgggGCGCGGa -3'
miRNA:   3'- aCCGGCGa-------CCCGCu--CUCGCU-----------UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 96226 0.68 0.770425
Target:  5'- cGGCCGCgGcGGCGGcGGCGAcCGCc- -3'
miRNA:   3'- aCCGGCGaC-CCGCUcUCGCUuGUGcu -5'
9212 5' -59.5 NC_002512.2 + 96301 0.67 0.796749
Target:  5'- gGGCCGCcgccgcGGGCGGGccGGuCGccGCACGAc -3'
miRNA:   3'- aCCGGCGa-----CCCGCUC--UC-GCu-UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 96618 0.67 0.779322
Target:  5'- cGGagaCGC-GGGgGAGGGCGAGgaaacCGCGAc -3'
miRNA:   3'- aCCg--GCGaCCCgCUCUCGCUU-----GUGCU- -5'
9212 5' -59.5 NC_002512.2 + 97317 0.73 0.485416
Target:  5'- cUGGCCGCgcccgccgGGGuCGAGGGCGGAgAggcCGAc -3'
miRNA:   3'- -ACCGGCGa-------CCC-GCUCUCGCUUgU---GCU- -5'
9212 5' -59.5 NC_002512.2 + 97381 0.75 0.360094
Target:  5'- cGGCgGCcGGaGaCGGGGGCGGGCGCGAc -3'
miRNA:   3'- aCCGgCGaCC-C-GCUCUCGCUUGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.