miRNA display CGI


Results 61 - 80 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 5' -59.5 NC_002512.2 + 123552 0.69 0.67661
Target:  5'- cGGgCGCggacgucgaGGGgGAGAGCGAcggGCugGAc -3'
miRNA:   3'- aCCgGCGa--------CCCgCUCUCGCU---UGugCU- -5'
9212 5' -59.5 NC_002512.2 + 130149 0.69 0.705457
Target:  5'- cGGCCGCgGGGCccGGcGGCGGGC-CGGc -3'
miRNA:   3'- aCCGGCGaCCCG--CUcUCGCUUGuGCU- -5'
9212 5' -59.5 NC_002512.2 + 109793 0.75 0.37546
Target:  5'- cGGgCGCcaGGGgGAGGGCGAACAgGAu -3'
miRNA:   3'- aCCgGCGa-CCCgCUCUCGCUUGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 2078 0.73 0.485416
Target:  5'- cGGaguccaCGCcGGGCGGGAGCGGGCgguACGGc -3'
miRNA:   3'- aCCg-----GCGaCCCGCUCUCGCUUG---UGCU- -5'
9212 5' -59.5 NC_002512.2 + 60751 0.72 0.503697
Target:  5'- cGGCgGCcGGGCGGacGAG-GAGCGCGAc -3'
miRNA:   3'- aCCGgCGaCCCGCU--CUCgCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 21250 0.71 0.569752
Target:  5'- gGGCggagaggGCUGGaGCGGGAGCGGgggacgacaGCACGGa -3'
miRNA:   3'- aCCGg------CGACC-CGCUCUCGCU---------UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 80682 0.71 0.58906
Target:  5'- cGGCgGCgacggGGGCGAGcggcguccggggGGCGAgggcGCGCGGg -3'
miRNA:   3'- aCCGgCGa----CCCGCUC------------UCGCU----UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 25415 0.7 0.61822
Target:  5'- aGGgCGUUacGGGCGuagacccGGGCGAACGCGGg -3'
miRNA:   3'- aCCgGCGA--CCCGCu------CUCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 47025 0.7 0.627968
Target:  5'- gGaGCUGCUGGGCGAgcuGAG-GAaGCACGGg -3'
miRNA:   3'- aC-CGGCGACCCGCU---CUCgCU-UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 130852 0.7 0.647465
Target:  5'- cGGCgGUcGGGCGAGGcccccacCGGGCGCGAg -3'
miRNA:   3'- aCCGgCGaCCCGCUCUc------GCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 98774 0.67 0.825106
Target:  5'- cUGGCCGUcgGGGgGcagcuguucaaugucAGAGCGugUACGAc -3'
miRNA:   3'- -ACCGGCGa-CCCgC---------------UCUCGCuuGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 105870 0.67 0.82186
Target:  5'- gUGGCCcagGGGC-AGcGCGAACACGc -3'
miRNA:   3'- -ACCGGcgaCCCGcUCuCGCUUGUGCu -5'
9212 5' -59.5 NC_002512.2 + 135357 0.68 0.721592
Target:  5'- cUGGCCGUcgaccgcuucguccUGGGCGGGuuCGAAgACGc -3'
miRNA:   3'- -ACCGGCG--------------ACCCGCUCucGCUUgUGCu -5'
9212 5' -59.5 NC_002512.2 + 154561 0.68 0.724419
Target:  5'- cGGUCGCcaUGGGgGGGcaggauaacGGCGAGgGCGAc -3'
miRNA:   3'- aCCGGCG--ACCCgCUC---------UCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 54424 0.68 0.743094
Target:  5'- cGGCCuGCUGGGgGAagaggacaGGGgGAccgGCACGGu -3'
miRNA:   3'- aCCGG-CGACCCgCU--------CUCgCU---UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 9881 0.68 0.743094
Target:  5'- cGGCCucucgacccGCcGGGCGAGGGgGAGCGa-- -3'
miRNA:   3'- aCCGG---------CGaCCCGCUCUCgCUUGUgcu -5'
9212 5' -59.5 NC_002512.2 + 34939 0.68 0.770425
Target:  5'- gGGUCGCggcgacggGGaGCG-GAGCGGcCGCGAc -3'
miRNA:   3'- aCCGGCGa-------CC-CGCuCUCGCUuGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 136080 0.67 0.779322
Target:  5'- cGGCCGggGGGCcGGcuGCGGACGCc- -3'
miRNA:   3'- aCCGGCgaCCCGcUCu-CGCUUGUGcu -5'
9212 5' -59.5 NC_002512.2 + 78396 0.67 0.796749
Target:  5'- aGGCCgGCUGGagauCGAGAGCGcGGgAUGAc -3'
miRNA:   3'- aCCGG-CGACCc---GCUCUCGC-UUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 33644 0.67 0.805264
Target:  5'- aGGCgCGCgcGGGCGc-GGCGGACAgGGu -3'
miRNA:   3'- aCCG-GCGa-CCCGCucUCGCUUGUgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.